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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445180384
Anticodon = TGG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.366113 (2 seq.)
>WENV181406703
OGCG01000970
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
1472
1398
-
Pro
TGG
[ENA]
¢þ
>ENV09004131
ADKI01000947
Hot springs metagenome ctg_1106445180384
82
8
-
Pro
TGG
[ENA]
¡û
Identical group No.556837 (2 seq.)
>WENV181407500
OGCG01033230
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
699
626
-
Pro
TGG
[ENA]
¢þ
>ENV09004124
ADKI01000693
Hot springs metagenome ctg_1106445180384
533
606
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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