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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445186506
Anticodon = TGA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73794 (6 seq.)
>WENV181228733
OFEH01002217
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
584
672
+
Ser
TGA
[ENA]
¢þ
>WENV181229493
OFEJ01020702
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
1
89
+
Ser
TGA
[ENA]
¢þ
>WENV181406276
OGCG01000068
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
58602
58514
-
Ser
TGA
[ENA]
¢þ
>WENV170668474
LAFJ01019488
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
236
148
-
Ser
TGA
[ENA]
¢þ
>W1911654385
QEFF01000045
Thermoproteota
Acidilobus sp. SCGC AC-742_E15 [QEFF]
1729
1641
-
Ser
TGA
[ENA]
¡û
>ENV09004092
ADKH01000793
Hot springs metagenome ctg_1106445186506
5140
5052
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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