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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445186506
Anticodon = TGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.470536 (6 seq.)
>A171000978
CP001742
Thermoproteota
Acidilobus saccharovorans 345-15 [CP001742]
265105
265179
+
Ala
TGC
-
¡û
>WENV181228698
OFEH01001321
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
4712
4637
-
Ala
TGC
[ENA]
¢þ
>WENV181229528
OFEJ01028087
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
511
586
+
Ala
TGC
[ENA]
¢þ
>WENV181406598
OGCG01000609
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
6932
7007
+
Ala
TGC
[ENA]
¢þ
>W1911654380
QEFE01000027
Thermoproteota
Acidilobus sp. SCGC AC-742_M05 [QEFE]
5124
5199
+
Ala
TGC
[ENA]
¡û
>ENV09004090
ADKH01000665
Hot springs metagenome ctg_1106445186506
996
1071
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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