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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = ACG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275257 (73 seq.)
>W1710787510
LJJR01000004
Deinococcota
Thermus scotoductus [LJJR]
10820
10744
-
Arg
ACG
[ENA]
¡û
>C171047197
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
1023576
1023652
+
Arg
ACG
-
¡û
>W131160738
AQWU01000068
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
37842
37766
-
Arg
ACG
[ENA]
¡û
>W131167492
ARDI01000002
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
6569
6645
+
Arg
ACG
[ENA]
¡û
>W131177892
ARLD01000063
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
27882
27958
+
Arg
ACG
[ENA]
¡û
>W131218071
ATXJ01000001
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
221811
221887
+
Arg
ACG
[ENA]
¡û
>W141080525
ATNI01000081
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
138
214
+
Arg
ACG
[ENA]
¡û
>W08010720
ABRG01000024
Bacillota
Paenibacillus sp. Y412MC10 Y412MC10 [ABRG]
22729
22656
-
Arg
ACG
[ENA]
¡û
>W08011571
ABVK01000002
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
167853
167929
+
Arg
ACG
[ENA]
¡û
>WENV181285658
OFGS01007887
[OFGS] hot springs metagenome; Water and soil
251
175
-
Arg
ACG
[ENA]
¢þ
>WENV181404645
OGCB01000012
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
27706
27782
+
Arg
ACG
[ENA]
¢þ
>WENV181405361
OGCE01000023
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
27793
27869
+
Arg
ACG
[ENA]
¢þ
>WENV181408054
OGCH01000459
[OGCH] hot springs metagenome; hot springs
12014
12090
+
Arg
ACG
[ENA]
¢þ
>C191159663
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
1781641
1781717
+
Arg
ACG
-
¡û
>W141818244
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
1717269
1717345
+
Arg
ACG
[ENA]
¡û
>W141818280
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
556888
556964
+
Arg
ACG
[ENA]
¡û
>W141820361
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
2031431
2031507
+
Arg
ACG
[ENA]
¡û
>W141820744
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
1628638
1628714
+
Arg
ACG
[ENA]
¡û
>W1911578783
PELL01000028
Deinococcota
Thermus scotoductus 39_S39 [PELL]
197
273
+
Arg
ACG
[ENA]
¡û
>W1911578867
PELM01000480
Deinococcota
Thermus scotoductus 38_S38 [PELM]
9215
9139
-
Arg
ACG
[ENA]
¡û
>W1911578912
PELN01000358
Deinococcota
Thermus scotoductus 37_S37 [PELN]
11153
11077
-
Arg
ACG
[ENA]
¡û
>W1911578948
PELO01000285
Deinococcota
Thermus scotoductus 35_S35 [PELO]
19238
19314
+
Arg
ACG
[ENA]
¡û
>W1911578972
PELP01000049
Deinococcota
Thermus scotoductus 34_S34 [PELP]
197
273
+
Arg
ACG
[ENA]
¡û
>W1911579036
PELQ01000110
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
18347
18423
+
Arg
ACG
[ENA]
¡û
>W1911579104
PELR01000363
Deinococcota
Thermus scotoductus 32_S32 [PELR]
11145
11069
-
Arg
ACG
[ENA]
¡û
>W1911579153
PELS01000298
Deinococcota
Thermus scotoductus 31_S31 [PELS]
19239
19315
+
Arg
ACG
[ENA]
¡û
>W1911579163
PELT01000019
Deinococcota
Thermus scotoductus 30_S30 [PELT]
5915
5839
-
Arg
ACG
[ENA]
¡û
>W1911579235
PELU01000222
Deinococcota
Thermus scotoductus 29_S29 [PELU]
20894
20970
+
Arg
ACG
[ENA]
¡û
>W1911579265
PELV01000058
Deinococcota
Thermus scotoductus 28_S28 [PELV]
180
256
+
Arg
ACG
[ENA]
¡û
>W1911579309
PELW01000051
Deinococcota
Thermus scotoductus 27_S27 [PELW]
4565
4489
-
Arg
ACG
[ENA]
¡û
>W1911579365
PELX01000055
Deinococcota
Thermus scotoductus 26_S26 [PELX]
19232
19308
+
Arg
ACG
[ENA]
¡û
>W1911579415
PELY01000058
Deinococcota
Thermus scotoductus 25_S25 [PELY]
197
273
+
Arg
ACG
[ENA]
¡û
>W1911579471
PELZ01000208
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
1156
1080
-
Arg
ACG
[ENA]
¡û
>W1911579525
PEMA01000313
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
11134
11058
-
Arg
ACG
[ENA]
¡û
>W1911579575
PEMB01000334
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
18368
18444
+
Arg
ACG
[ENA]
¡û
>W1911579627
PEMC01000324
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
22048
22124
+
Arg
ACG
[ENA]
¡û
>W1911579679
PEMD01000308
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
19229
19305
+
Arg
ACG
[ENA]
¡û
>W1911579729
PEME01000338
Deinococcota
Thermus scotoductus 19_S19 [PEME]
608
684
+
Arg
ACG
[ENA]
¡û
>W1911579774
PEMF01000398
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
941
1017
+
Arg
ACG
[ENA]
¡û
>W1911579790
PEMG01000043
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
5420
5344
-
Arg
ACG
[ENA]
¡û
>W1911579855
PEMH01000201
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
1146
1070
-
Arg
ACG
[ENA]
¡û
>W1911579912
PEMI01000396
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
11134
11058
-
Arg
ACG
[ENA]
¡û
>W1911579934
PEMJ01000052
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
197
273
+
Arg
ACG
[ENA]
¡û
>W1911579990
PEMK01000199
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
10592
10668
+
Arg
ACG
[ENA]
¡û
>W1911580052
PEML01000299
Deinococcota
Thermus scotoductus 12_S12 [PEML]
593
669
+
Arg
ACG
[ENA]
¡û
>W1911580105
PEMM01000277
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
22072
22148
+
Arg
ACG
[ENA]
¡û
>W1911580129
PEMN01000058
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
217
293
+
Arg
ACG
[ENA]
¡û
>W1911580192
PEMO01000330
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
4420
4344
-
Arg
ACG
[ENA]
¡û
>W1911580249
PEMP01000406
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
19278
19354
+
Arg
ACG
[ENA]
¡û
>W1911580289
PEMQ01000270
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
11141
11065
-
Arg
ACG
[ENA]
¡û
>W1911580318
PEMR01000033
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
22206
22282
+
Arg
ACG
[ENA]
¡û
>W1911580354
PEMS01000041
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
5434
5358
-
Arg
ACG
[ENA]
¡û
>W1911580413
PEMT01000044
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
5915
5839
-
Arg
ACG
[ENA]
¡û
>W1911580452
PEMU01000033
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
19229
19305
+
Arg
ACG
[ENA]
¡û
>W1911580514
PEMV01000144
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
10585
10661
+
Arg
ACG
[ENA]
¡û
>W1911580575
PEMW01000333
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
21458
21534
+
Arg
ACG
[ENA]
¡û
>W1810268428
PRDA01000008
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
30006
30082
+
Arg
ACG
[ENA]
¡û
>W1810605091
QGMX01000003
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
148208
148132
-
Arg
ACG
[ENA]
¡û
>W1810889146
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
1180404
1180480
+
Arg
ACG
[ENA]
¡û
>ENV09004157
ADKJ01000273
Hot springs metagenome ctg_1106445192081
1074
1150
+
Arg
ACG
[ENA]
¡û
>C11116343
CP002361
Deinococcota
Oceanithermus profundus DSM 14977 [CP002361]
542241
542165
-
Arg
ACG
[Ensembl]
¡û
>W1511312778
JPSL02000038
Deinococcota
Thermus filiformis ATCC 43280 [JPSL]
302554
302478
-
Arg
ACG
[ENA]
¡û
>W1511401719
JTJB01000046
Deinococcota
Thermus sp. 2.9 [JTJB]
55
131
+
Arg
ACG
[ENA]
¡û
>C11123059
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
2318721
2318797
+
Arg
ACG
[Ensembl]
¡û
>C121006408
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
2216024
2216100
+
Arg
ACG
[Ensembl]
¡û
>C161028682
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
2131335
2131411
+
Arg
ACG
-
¡û
>W1610045309
BBBL01000047
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
2671
2747
+
Arg
ACG
[ENA]
¡û
>W1610045396
BBBN01000027
Deinococcota
Thermus sp. JCM 17653 [BBBN]
11198
11274
+
Arg
ACG
[ENA]
¡û
>C131002402
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
1926272
1926348
+
Arg
ACG
[Ensembl]
¡û
>W1610651365
LJJR01000004
Deinococcota
Thermus scotoductus [LJJR]
10820
10744
-
Arg
ACG
[ENA]
¡û
>W1710042150
BBBL01000047
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
2671
2747
+
Arg
ACG
[ENA]
¡û
>W1710042237
BBBN01000027
Deinococcota
Thermus sp. JCM 17653 [BBBN]
11198
11274
+
Arg
ACG
[ENA]
¡û
>W1710514660
FNBC01000028
Deinococcota
Thermus arciformis [FNBC]
25797
25873
+
Arg
ACG
[ENA]
¡û
Identical group No.281248 (5 seq.)
>C08010685
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
1013899
1013973
+
Arg
ACG
[Ensembl]
¡û
>W09107720
ABLS01000005
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [ABLS]
3165
3239
+
Arg
ACG
[ENA]
¡û
>W09114568
ABZS01000100
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
3696
3770
+
Arg
ACG
[ENA]
¡û
>ENV09004174
ADKJ01000895
Hot springs metagenome ctg_1106445192081
1069
1143
+
Arg
ACG
[ENA]
¡û
>ENV09004207
ADKK01000048
Hot springs metagenome ctg_1106445177583
1607
1533
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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