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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = CAA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.128126 (8 seq.)
>WENV181404570
OGCA01015864
[OGCA] hot springs metagenome; Conch Spring, Yellowstone National Park, Wyoming, USA
712
626
-
Leu
CAA
[ENA]
¢þ
>WENV181404693
OGCB01000060
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
19308
19222
-
Leu
CAA
[ENA]
¢þ
>WENV181405372
OGCE01000044
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
19308
19222
-
Leu
CAA
[ENA]
¢þ
>WENV181408126
OGCH01000640
[OGCH] hot springs metagenome; hot springs
5779
5693
-
Leu
CAA
[ENA]
¢þ
>W08011567
ABVK01000001
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
65252
65169
-
Leu
CAA
[ENA]
¡û
>W1810889164
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
1733917
1733831
-
Leu
CAA
[ENA]
¡û
>ENV09004182
ADKJ01001211
Hot springs metagenome ctg_1106445192081
971
885
-
Leu
CAA
[ENA]
¡û
>C161028677
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
1683993
1684079
+
Leu
CAA
-
¡û
Identical group No.130244 (6 seq.)
>C08010681
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
700032
700117
+
Leu
CAA
[Ensembl]
¡û
>W141557051
JHUV01000008
Aquificota
Sulfurihydrogenibium subterraneum DSM 15120 [JHUV]
264493
264576
+
Leu
CAA
[ENA]
¡û
>W09107715
ABLS01000003
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [ABLS]
17094
17179
+
Leu
CAA
[ENA]
¡û
>C09109121
CP001229
Aquificota
Sulfurihydrogenibium azorense Az-Fu1 [CP001229]
545704
545621
-
Leu
CAA
[Ensembl]
¡û
>ENV09004170
ADKJ01000722
Hot springs metagenome ctg_1106445192081
2291
2376
+
Leu
CAA
[ENA]
¡û
>ENV09004221
ADKK01000200
Hot springs metagenome ctg_1106445177583
4300
4215
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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