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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = CAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655873 (74 seq.)
>W1710787536
LJJR01000018
Deinococcota
Thermus scotoductus [LJJR]
39639
39713
+
Val
CAC
[ENA]
¡û
>C171047233
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
543233
543159
-
Val
CAC
-
¡û
>W131155592
AQOS01000003
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
79587
79513
-
Val
CAC
[ENA]
¡û
>W131160726
AQWU01000065
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
10873
10947
+
Val
CAC
[ENA]
¡û
>W131167515
ARDI01000005
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
23000
23074
+
Val
CAC
[ENA]
¡û
>W131177926
ARLD01000091
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
9924
9998
+
Val
CAC
[ENA]
¡û
>W131218085
ATXJ01000002
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
57403
57329
-
Val
CAC
[ENA]
¡û
>C025911
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
653218
653144
-
Val
CAC
[Ensembl]
¡û
>C025949
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
978219
978145
-
Val
CAC
[Ensembl]
¡û
>W141080534
ATNI01000128
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
11210
11284
+
Val
CAC
[ENA]
¡û
>WENV181227756
OFDN01040072
[OFDN] hot springs metagenome; Water
1186
1260
+
Val
CAC
[ENA]
¢þ
>WENV181404748
OGCB01000135
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
9813
9887
+
Val
CAC
[ENA]
¢þ
>WENV181405409
OGCE01000070
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
4373
4447
+
Val
CAC
[ENA]
¢þ
>WENV181408204
OGCH01000944
[OGCH] hot springs metagenome; hot springs
10146
10072
-
Val
CAC
[ENA]
¢þ
>W08011604
ABVK01000017
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
13631
13705
+
Val
CAC
[ENA]
¡û
>C191159648
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
2223
2297
+
Val
CAC
-
¡û
>W141818229
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
32985
33059
+
Val
CAC
[ENA]
¡û
>W141818293
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
2154683
2154609
-
Val
CAC
[ENA]
¡û
>W141820346
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
577955
578029
+
Val
CAC
[ENA]
¡û
>W141820732
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
30611
30685
+
Val
CAC
[ENA]
¡û
>W1911578823
PELL01000411
Deinococcota
Thermus scotoductus 39_S39 [PELL]
3619
3545
-
Val
CAC
[ENA]
¡û
>W1911578834
PELM01000038
Deinococcota
Thermus scotoductus 38_S38 [PELM]
5004
5078
+
Val
CAC
[ENA]
¡û
>W1911578915
PELN01000373
Deinococcota
Thermus scotoductus 37_S37 [PELN]
4999
5073
+
Val
CAC
[ENA]
¡û
>W1911578923
PELO01000020
Deinococcota
Thermus scotoductus 35_S35 [PELO]
5432
5506
+
Val
CAC
[ENA]
¡û
>W1911578970
PELP01000038
Deinococcota
Thermus scotoductus 34_S34 [PELP]
4247
4321
+
Val
CAC
[ENA]
¡û
>W1911579017
PELQ01000004
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
5404
5478
+
Val
CAC
[ENA]
¡û
>W1911579105
PELR01000364
Deinococcota
Thermus scotoductus 32_S32 [PELR]
5010
5084
+
Val
CAC
[ENA]
¡û
>W1911579156
PELS01000313
Deinococcota
Thermus scotoductus 31_S31 [PELS]
5392
5466
+
Val
CAC
[ENA]
¡û
>W1911579192
PELT01000265
Deinococcota
Thermus scotoductus 30_S30 [PELT]
5403
5477
+
Val
CAC
[ENA]
¡û
>W1911579193
PELT01000265
Deinococcota
Thermus scotoductus 30_S30 [PELT]
11170
11096
-
Val
CAC
[ENA]
¡û
>W1911579247
PELU01000434
Deinococcota
Thermus scotoductus 29_S29 [PELU]
7645
7571
-
Val
CAC
[ENA]
¡û
>W1911579292
PELV01000373
Deinococcota
Thermus scotoductus 28_S28 [PELV]
4800
4874
+
Val
CAC
[ENA]
¡û
>W1911579324
PELW01000149
Deinococcota
Thermus scotoductus 27_S27 [PELW]
2205
2131
-
Val
CAC
[ENA]
¡û
>W1911579396
PELX01000346
Deinococcota
Thermus scotoductus 26_S26 [PELX]
5396
5470
+
Val
CAC
[ENA]
¡û
>W1911579443
PELY01000427
Deinococcota
Thermus scotoductus 25_S25 [PELY]
5006
5080
+
Val
CAC
[ENA]
¡û
>W1911579451
PELZ01000027
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
2115
2041
-
Val
CAC
[ENA]
¡û
>W1911579526
PEMA01000325
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
3666
3592
-
Val
CAC
[ENA]
¡û
>W1911579540
PEMB01000013
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
1820
1746
-
Val
CAC
[ENA]
¡û
>W1911579636
PEMC01000351
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
2932
2858
-
Val
CAC
[ENA]
¡û
>W1911579671
PEMD01000282
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
9909
9983
+
Val
CAC
[ENA]
¡û
>W1911579685
PEME01000008
Deinococcota
Thermus scotoductus 19_S19 [PEME]
5399
5473
+
Val
CAC
[ENA]
¡û
>W1911579777
PEMF01000420
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
5006
5080
+
Val
CAC
[ENA]
¡û
>W1911579794
PEMG01000068
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
4126
4200
+
Val
CAC
[ENA]
¡û
>W1911579864
PEMH01000369
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
3614
3540
-
Val
CAC
[ENA]
¡û
>W1911579888
PEMI01000122
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
4993
5067
+
Val
CAC
[ENA]
¡û
>W1911579969
PEMJ01000379
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
5006
5080
+
Val
CAC
[ENA]
¡û
>W1911580005
PEMK01000318
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
5402
5476
+
Val
CAC
[ENA]
¡û
>W1911580051
PEML01000298
Deinococcota
Thermus scotoductus 12_S12 [PEML]
9909
9983
+
Val
CAC
[ENA]
¡û
>W1911580112
PEMM01000311
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
3614
3540
-
Val
CAC
[ENA]
¡û
>W1911580121
PEMN01000012
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
1810
1736
-
Val
CAC
[ENA]
¡û
>W1911580189
PEMO01000255
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
7642
7568
-
Val
CAC
[ENA]
¡û
>W1911580248
PEMP01000392
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
6958
6884
-
Val
CAC
[ENA]
¡û
>W1911580300
PEMQ01000299
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
5398
5472
+
Val
CAC
[ENA]
¡û
>W1911580308
PEMR01000003
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
1901
1827
-
Val
CAC
[ENA]
¡û
>W1911580368
PEMS01000147
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
2116
2042
-
Val
CAC
[ENA]
¡û
>W1911580441
PEMT01000331
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
5383
5457
+
Val
CAC
[ENA]
¡û
>W1911580481
PEMU01000282
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
5429
5503
+
Val
CAC
[ENA]
¡û
>W1911580538
PEMV01000331
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
5399
5473
+
Val
CAC
[ENA]
¡û
>W1911580582
PEMW01000432
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
6950
6876
-
Val
CAC
[ENA]
¡û
>W1810268432
PRDA01000012
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
2388
2462
+
Val
CAC
[ENA]
¡û
>W1810605113
QGMX01000032
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
11330
11256
-
Val
CAC
[ENA]
¡û
>W1810889159
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
1650281
1650355
+
Val
CAC
[ENA]
¡û
>ENV09004201
ADKJ01001591
Hot springs metagenome ctg_1106445192081
1061
1135
+
Val
CAC
[ENA]
¡û
>W1511401711
JTJB01000036
Deinococcota
Thermus sp. 2.9 [JTJB]
122059
121985
-
Val
CAC
[ENA]
¡û
>C11123044
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
605024
605098
+
Val
CAC
[Ensembl]
¡û
>C121006421
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
1850863
1850789
-
Val
CAC
[Ensembl]
¡û
>C161028692
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
1782851
1782777
-
Val
CAC
-
¡û
>W1610045320
BBBL01000127
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
1532
1606
+
Val
CAC
[ENA]
¡û
>W1610045398
BBBN01000039
Deinococcota
Thermus sp. JCM 17653 [BBBN]
5615
5541
-
Val
CAC
[ENA]
¡û
>C131002389
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
792838
792912
+
Val
CAC
[Ensembl]
¡û
>W1610651391
LJJR01000018
Deinococcota
Thermus scotoductus [LJJR]
39639
39713
+
Val
CAC
[ENA]
¡û
>W1710042161
BBBL01000127
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
1532
1606
+
Val
CAC
[ENA]
¡û
>W1710042239
BBBN01000039
Deinococcota
Thermus sp. JCM 17653 [BBBN]
5615
5541
-
Val
CAC
[ENA]
¡û
>W1710514644
FNBC01000009
Deinococcota
Thermus arciformis [FNBC]
10814
10888
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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