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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = CAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118006 (51 seq.)
>W1710787526
LJJR01000012
Deinococcota
Thermus scotoductus [LJJR]
88622
88708
+
Leu
CAG
[ENA]
¡û
>W131177882
ARLD01000027
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
4777
4691
-
Leu
CAG
[ENA]
¡û
>WENV180013320
FMSI01067215
[FMSI] soil metagenome; Soil
85
1
-
Leu
CAG
[ENA]
¢þ
>WENV180014157
FPIC01070799
[FPIC] soil metagenome; Soil
86
1
-
Leu
CAG
[ENA]
¢þ
>WENV180014728
FQKF010116092
[FQKF] soil metagenome; Soil
2
87
+
Leu
CAG
[ENA]
¢þ
>WENV181404792
OGCB01000284
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
4290
4376
+
Leu
CAG
[ENA]
¢þ
>WENV181405357
OGCE01000020
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
51364
51450
+
Leu
CAG
[ENA]
¢þ
>W141818230
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
123719
123805
+
Leu
CAG
[ENA]
¡û
>W141820347
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
672835
672921
+
Leu
CAG
[ENA]
¡û
>W1911578812
PELL01000370
Deinococcota
Thermus scotoductus 39_S39 [PELL]
5248
5162
-
Leu
CAG
[ENA]
¡û
>W1911578868
PELM01000482
Deinococcota
Thermus scotoductus 38_S38 [PELM]
1637
1551
-
Leu
CAG
[ENA]
¡û
>W1911578877
PELN01000044
Deinococcota
Thermus scotoductus 37_S37 [PELN]
4452
4366
-
Leu
CAG
[ENA]
¡û
>W1911578956
PELO01000294
Deinococcota
Thermus scotoductus 35_S35 [PELO]
222
308
+
Leu
CAG
[ENA]
¡û
>W1911578973
PELP01000055
Deinococcota
Thermus scotoductus 34_S34 [PELP]
7570
7656
+
Leu
CAG
[ENA]
¡û
>W1911579018
PELQ01000013
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
218
304
+
Leu
CAG
[ENA]
¡û
>W1911579080
PELR01000088
Deinococcota
Thermus scotoductus 32_S32 [PELR]
18702
18788
+
Leu
CAG
[ENA]
¡û
>W1911579149
PELS01000286
Deinococcota
Thermus scotoductus 31_S31 [PELS]
220
306
+
Leu
CAG
[ENA]
¡û
>W1911579162
PELT01000005
Deinococcota
Thermus scotoductus 30_S30 [PELT]
411
497
+
Leu
CAG
[ENA]
¡û
>W1911579256
PELU01000472
Deinococcota
Thermus scotoductus 29_S29 [PELU]
4453
4367
-
Leu
CAG
[ENA]
¡û
>W1911579280
PELV01000244
Deinococcota
Thermus scotoductus 28_S28 [PELV]
8215
8129
-
Leu
CAG
[ENA]
¡û
>W1911579346
PELW01000393
Deinococcota
Thermus scotoductus 27_S27 [PELW]
7611
7697
+
Leu
CAG
[ENA]
¡û
>W1911579355
PELX01000021
Deinococcota
Thermus scotoductus 26_S26 [PELX]
224
310
+
Leu
CAG
[ENA]
¡û
>W1911579434
PELY01000255
Deinococcota
Thermus scotoductus 25_S25 [PELY]
8901
8815
-
Leu
CAG
[ENA]
¡û
>W1911579488
PELZ01000459
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
5881
5795
-
Leu
CAG
[ENA]
¡û
>W1911579521
PEMA01000294
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
12205
12119
-
Leu
CAG
[ENA]
¡û
>W1911579542
PEMB01000020
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
6617
6531
-
Leu
CAG
[ENA]
¡û
>W1911579591
PEMC01000017
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
6628
6542
-
Leu
CAG
[ENA]
¡û
>W1911579676
PEMD01000288
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
216
302
+
Leu
CAG
[ENA]
¡û
>W1911579686
PEME01000012
Deinococcota
Thermus scotoductus 19_S19 [PEME]
218
304
+
Leu
CAG
[ENA]
¡û
>W1911579760
PEMF01000310
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
7669
7755
+
Leu
CAG
[ENA]
¡û
>W1911579821
PEMG01000436
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
7624
7710
+
Leu
CAG
[ENA]
¡û
>W1911579865
PEMH01000372
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
6531
6617
+
Leu
CAG
[ENA]
¡û
>W1911579879
PEMI01000044
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
18665
18751
+
Leu
CAG
[ENA]
¡û
>W1911579964
PEMJ01000354
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
2536
2450
-
Leu
CAG
[ENA]
¡û
>W1911579972
PEMK01000024
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
6659
6573
-
Leu
CAG
[ENA]
¡û
>W1911580017
PEML01000025
Deinococcota
Thermus scotoductus 12_S12 [PEML]
216
302
+
Leu
CAG
[ENA]
¡û
>W1911580068
PEMM01000023
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
6639
6553
-
Leu
CAG
[ENA]
¡û
>W1911580147
PEMN01000345
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
13266
13180
-
Leu
CAG
[ENA]
¡û
>W1911580168
PEMO01000044
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
18695
18781
+
Leu
CAG
[ENA]
¡û
>W1911580218
PEMP01000088
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
3190
3104
-
Leu
CAG
[ENA]
¡û
>W1911580257
PEMQ01000013
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
243
329
+
Leu
CAG
[ENA]
¡û
>W1911580312
PEMR01000012
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
218
304
+
Leu
CAG
[ENA]
¡û
>W1911580392
PEMS01000412
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
7107
7021
-
Leu
CAG
[ENA]
¡û
>W1911580402
PEMT01000015
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
216
302
+
Leu
CAG
[ENA]
¡û
>W1911580450
PEMU01000009
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
218
304
+
Leu
CAG
[ENA]
¡û
>W1911580498
PEMV01000009
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
219
305
+
Leu
CAG
[ENA]
¡û
>W1911580588
PEMW01000477
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
18736
18822
+
Leu
CAG
[ENA]
¡û
>W1810268462
PRDA01000064
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
20138
20224
+
Leu
CAG
[ENA]
¡û
>ENV09004169
ADKJ01000699
Hot springs metagenome ctg_1106445192081
256
342
+
Leu
CAG
[ENA]
¡û
>C11123045
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
705256
705342
+
Leu
CAG
[Ensembl]
¡û
>W1610651381
LJJR01000012
Deinococcota
Thermus scotoductus [LJJR]
88622
88708
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK