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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = CCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456536 (83 seq.)
>W1710787518
LJJR01000005
Deinococcota
Thermus scotoductus [LJJR]
130784
130859
+
Gly
CCC
[ENA]
¡û
>C171047203
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
1255979
1256054
+
Gly
CCC
-
¡û
>W131155628
AQOS01000049
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
20112
20187
+
Gly
CCC
[ENA]
¡û
>W131160743
AQWU01000072
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
43941
44016
+
Gly
CCC
[ENA]
¡û
>W131167535
ARDI01000019
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
16065
16140
+
Gly
CCC
[ENA]
¡û
>W131177888
ARLD01000053
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
16091
16166
+
Gly
CCC
[ENA]
¡û
>W131218112
ATXJ01000018
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
616
541
-
Gly
CCC
[ENA]
¡û
>W131231976
AUIW01000022
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
15798
15873
+
Gly
CCC
[ENA]
¡û
>C025889
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
1649701
1649776
+
Gly
CCC
[Ensembl]
¡û
>C025960
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
240379
240304
-
Gly
CCC
[Ensembl]
¡û
>WENV181227383
OFDN01008920
[OFDN] hot springs metagenome; Water
3255
3180
-
Gly
CCC
[ENA]
¢þ
>WENV181285489
OFGS01000999
[OFGS] hot springs metagenome; Water and soil
1011
1086
+
Gly
CCC
[ENA]
¢þ
>W08011589
ABVK01000005
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
16548
16623
+
Gly
CCC
[ENA]
¡û
>WENV181404795
OGCB01000292
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
295
220
-
Gly
CCC
[ENA]
¢þ
>WENV181407922
OGCH01000212
[OGCH] hot springs metagenome; hot springs
21509
21582
+
Gly
CCC
[ENA]
¢þ
>WENV181408139
OGCH01000685
[OGCH] hot springs metagenome; hot springs
325
250
-
Gly
CCC
[ENA]
¢þ
>W141186986
AYLD01000077
Bacillota
Firmicutes bacterium JGI 0000112-M16 [AYLD]
1946
2021
+
Gly
CCC
[ENA]
¡û
>C191159671
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
1979386
1979461
+
Gly
CCC
-
¡û
>C191190022
LR027517
Deinococcota
Thermus thermophilus [LR027517]
1568586
1568511
-
Gly
CCC
-
¡û
>W141818252
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
1911511
1911586
+
Gly
CCC
[ENA]
¡û
>W141818318
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
339481
339406
-
Gly
CCC
[ENA]
¡û
>W141820340
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
159834
159909
+
Gly
CCC
[ENA]
¡û
>W141820752
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
1809567
1809642
+
Gly
CCC
[ENA]
¡û
>W1911578791
PELL01000055
Deinococcota
Thermus scotoductus 39_S39 [PELL]
392
317
-
Gly
CCC
[ENA]
¡û
>W1911578864
PELM01000471
Deinococcota
Thermus scotoductus 38_S38 [PELM]
476
401
-
Gly
CCC
[ENA]
¡û
>W1911578899
PELN01000188
Deinococcota
Thermus scotoductus 37_S37 [PELN]
18354
18429
+
Gly
CCC
[ENA]
¡û
>W1911578921
PELO01000019
Deinococcota
Thermus scotoductus 35_S35 [PELO]
5955
6030
+
Gly
CCC
[ENA]
¡û
>W1911578996
PELP01000321
Deinococcota
Thermus scotoductus 34_S34 [PELP]
14978
15053
+
Gly
CCC
[ENA]
¡û
>W1911579021
PELQ01000014
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
5951
6026
+
Gly
CCC
[ENA]
¡û
>W1911579090
PELR01000244
Deinococcota
Thermus scotoductus 32_S32 [PELR]
18347
18422
+
Gly
CCC
[ENA]
¡û
>W1911579141
PELS01000273
Deinococcota
Thermus scotoductus 31_S31 [PELS]
391
316
-
Gly
CCC
[ENA]
¡û
>W1911579166
PELT01000021
Deinococcota
Thermus scotoductus 30_S30 [PELT]
391
316
-
Gly
CCC
[ENA]
¡û
>W1911579228
PELU01000144
Deinococcota
Thermus scotoductus 29_S29 [PELU]
18354
18429
+
Gly
CCC
[ENA]
¡û
>W1911579284
PELV01000262
Deinococcota
Thermus scotoductus 28_S28 [PELV]
396
471
+
Gly
CCC
[ENA]
¡û
>W1911579321
PELW01000133
Deinococcota
Thermus scotoductus 27_S27 [PELW]
19187
19262
+
Gly
CCC
[ENA]
¡û
>W1911579361
PELX01000033
Deinococcota
Thermus scotoductus 26_S26 [PELX]
391
316
-
Gly
CCC
[ENA]
¡û
>W1911579410
PELY01000033
Deinococcota
Thermus scotoductus 25_S25 [PELY]
392
317
-
Gly
CCC
[ENA]
¡û
>W1911579457
PELZ01000041
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
5562
5637
+
Gly
CCC
[ENA]
¡û
>W1911579529
PEMA01000326
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
391
316
-
Gly
CCC
[ENA]
¡û
>W1911579580
PEMB01000351
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
787
712
-
Gly
CCC
[ENA]
¡û
>W1911579595
PEMC01000029
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
5954
6029
+
Gly
CCC
[ENA]
¡û
>W1911579639
PEMD01000021
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
391
316
-
Gly
CCC
[ENA]
¡û
>W1911579715
PEME01000314
Deinococcota
Thermus scotoductus 19_S19 [PEME]
15318
15393
+
Gly
CCC
[ENA]
¡û
>W1911579737
PEMF01000013
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
7218
7293
+
Gly
CCC
[ENA]
¡û
>W1911579803
PEMG01000233
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
16424
16349
-
Gly
CCC
[ENA]
¡û
>W1911579853
PEMH01000198
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
395
470
+
Gly
CCC
[ENA]
¡û
>W1911579893
PEMI01000166
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
18423
18498
+
Gly
CCC
[ENA]
¡û
>W1911579928
PEMJ01000024
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
5406
5481
+
Gly
CCC
[ENA]
¡û
>W1911580013
PEMK01000322
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
29354
29429
+
Gly
CCC
[ENA]
¡û
>W1911580058
PEML01000317
Deinococcota
Thermus scotoductus 12_S12 [PEML]
391
316
-
Gly
CCC
[ENA]
¡û
>W1911580073
PEMM01000033
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
391
316
-
Gly
CCC
[ENA]
¡û
>W1911580118
PEMN01000006
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
436
361
-
Gly
CCC
[ENA]
¡û
>W1911580187
PEMO01000177
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
18354
18429
+
Gly
CCC
[ENA]
¡û
>W1911580231
PEMP01000155
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
18354
18429
+
Gly
CCC
[ENA]
¡û
>W1911580286
PEMQ01000258
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
881
806
-
Gly
CCC
[ENA]
¡û
>W1911580315
PEMR01000015
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
881
806
-
Gly
CCC
[ENA]
¡û
>W1911580380
PEMS01000354
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
15106
15181
+
Gly
CCC
[ENA]
¡û
>W1911580408
PEMT01000023
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
5953
6028
+
Gly
CCC
[ENA]
¡û
>W1911580461
PEMU01000044
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
881
806
-
Gly
CCC
[ENA]
¡û
>W1911580501
PEMV01000012
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
5953
6028
+
Gly
CCC
[ENA]
¡û
>W1911580553
PEMW01000035
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
694
619
-
Gly
CCC
[ENA]
¡û
>W1810268452
PRDA01000036
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
18571
18646
+
Gly
CCC
[ENA]
¡û
>W1810605111
QGMX01000029
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
285
210
-
Gly
CCC
[ENA]
¡û
>W1810889154
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
1402785
1402860
+
Gly
CCC
[ENA]
¡û
>ENV09004164
ADKJ01000452
Hot springs metagenome ctg_1106445192081
2443
2518
+
Gly
CCC
[ENA]
¡û
>C11114427
CP002630
Deinococcota
Marinithermus hydrothermalis DSM 14884 [CP002630]
419166
419241
+
Gly
CCC
[Ensembl]
¡û
>C11116307
CP002361
Deinococcota
Oceanithermus profundus DSM 14977 [CP002361]
619669
619744
+
Gly
CCC
[Ensembl]
¡û
>W1511312803
JPSL02000040
Deinococcota
Thermus filiformis ATCC 43280 [JPSL]
433415
433340
-
Gly
CCC
[ENA]
¡û
>W1511401693
JTJB01000025
Deinococcota
Thermus sp. 2.9 [JTJB]
351
276
-
Gly
CCC
[ENA]
¡û
>C11123038
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
150554
150629
+
Gly
CCC
[Ensembl]
¡û
>C11123173
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
128194
128269
+
Gly
CCC
[Ensembl]
¡û
>C121006415
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
2108068
2107993
-
Gly
CCC
[Ensembl]
¡û
>C121009720
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
132995
133070
+
Gly
CCC
[Ensembl]
¡û
>C161028667
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
61680
61755
+
Gly
CCC
-
¡û
>C161067122
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
26321
26246
-
Gly
CCC
[Ensembl]
¡û
>W121056013
AIJQ01000001
Deinococcota
Thermus parvatiensis RL [AIJQ]
44235
44310
+
Gly
CCC
[ENA]
¡û
>W1610045331
BBBL01000217
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
217
142
-
Gly
CCC
[ENA]
¡û
>W1610045413
BBBN01000187
Deinococcota
Thermus sp. JCM 17653 [BBBN]
346
271
-
Gly
CCC
[ENA]
¡û
>C131002410
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
1855420
1855345
-
Gly
CCC
[Ensembl]
¡û
>W1610651373
LJJR01000005
Deinococcota
Thermus scotoductus [LJJR]
130784
130859
+
Gly
CCC
[ENA]
¡û
>W1710042172
BBBL01000217
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
217
142
-
Gly
CCC
[ENA]
¡û
>W1710042254
BBBN01000187
Deinococcota
Thermus sp. JCM 17653 [BBBN]
346
271
-
Gly
CCC
[ENA]
¡û
>W1710514669
FNBC01000056
Deinococcota
Thermus arciformis [FNBC]
929
854
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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