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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = CCT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281249 (5 seq.)
>C08010704
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
560078
560003
-
Arg
CCT
[Ensembl]
¡û
>W09107735
ABLS01000049
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [ABLS]
4956
4881
-
Arg
CCT
[ENA]
¡û
>W09114570
ABZS01000114
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
2945
2871
-
Arg
CCT
[ENA]
¡û
>ENV09004159
ADKJ01000356
Hot springs metagenome ctg_1106445192081
3164
3090
-
Arg
CCT
[ENA]
¡û
>ENV09004209
ADKK01000143
Hot springs metagenome ctg_1106445177583
13370
13444
+
Arg
CCT
[ENA]
¡û
Identical group No.288129 (4 seq.)
>WENV181229197
OFEJ01001385
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
5704
5630
-
Arg
CCT
[ENA]
¢þ
>WENV181404598
OGCA01021303
[OGCA] hot springs metagenome; Conch Spring, Yellowstone National Park, Wyoming, USA
148
222
+
Arg
CCT
[ENA]
¢þ
>WENV181407853
OGCH01000136
[OGCH] hot springs metagenome; hot springs
13467
13541
+
Arg
CCT
[ENA]
¢þ
>ENV09004181
ADKJ01001127
Hot springs metagenome ctg_1106445192081
1077
1003
-
Arg
CCT
[ENA]
¡û
Identical group No.352285 (1 seq.)
>ENV09004196
ADKJ01001543
Hot springs metagenome ctg_1106445192081
1535
1611
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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