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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = CTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655869 (69 seq.)
>W1710787512
LJJR01000005
Deinococcota
Thermus scotoductus [LJJR]
60191
60265
+
Glu
CTC
[ENA]
¡û
>C171047198
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
1094579
1094653
+
Glu
CTC
-
¡û
>W131167496
ARDI01000002
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
183964
184038
+
Glu
CTC
[ENA]
¡û
>W131177902
ARLD01000078
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
39382
39308
-
Glu
CTC
[ENA]
¡û
>W131231981
AUIW01000033
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
1239
1313
+
Glu
CTC
[ENA]
¡û
>W141080527
ATNI01000081
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
117512
117586
+
Glu
CTC
[ENA]
¡û
>W08011579
ABVK01000002
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
58324
58253
-
Glu
CTC
[ENA]
¡û
>WENV181404685
OGCB01000042
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
25808
25734
-
Glu
CTC
[ENA]
¢þ
>WENV181405345
OGCE01000007
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
73506
73432
-
Glu
CTC
[ENA]
¢þ
>WENV181407957
OGCH01000291
[OGCH] hot springs metagenome; hot springs
19216
19142
-
Glu
CTC
[ENA]
¢þ
>WENV170700808
LJSS01001623
[LJSS] hot springs metagenome; water from Lobios Hot Spring
208
282
+
Glu
CTC
[ENA]
¢þ
>C191159665
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
1906298
1906372
+
Glu
CTC
-
¡û
>W141818246
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
1823201
1823275
+
Glu
CTC
[ENA]
¡û
>W141818312
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
402279
402205
-
Glu
CTC
[ENA]
¡û
>W141820334
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
97317
97391
+
Glu
CTC
[ENA]
¡û
>W141820746
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
1749480
1749554
+
Glu
CTC
[ENA]
¡û
>W1911578818
PELL01000391
Deinococcota
Thermus scotoductus 39_S39 [PELL]
28670
28744
+
Glu
CTC
[ENA]
¡û
>W1911578849
PELM01000333
Deinococcota
Thermus scotoductus 38_S38 [PELM]
25883
25809
-
Glu
CTC
[ENA]
¡û
>W1911578873
PELN01000013
Deinococcota
Thermus scotoductus 37_S37 [PELN]
2183
2109
-
Glu
CTC
[ENA]
¡û
>W1911578930
PELO01000054
Deinococcota
Thermus scotoductus 35_S35 [PELO]
701
775
+
Glu
CTC
[ENA]
¡û
>W1911578989
PELP01000222
Deinococcota
Thermus scotoductus 34_S34 [PELP]
5182
5256
+
Glu
CTC
[ENA]
¡û
>W1911579030
PELQ01000053
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
701
775
+
Glu
CTC
[ENA]
¡û
>W1911579070
PELR01000013
Deinococcota
Thermus scotoductus 32_S32 [PELR]
2183
2109
-
Glu
CTC
[ENA]
¡û
>W1911579160
PELS01000327
Deinococcota
Thermus scotoductus 31_S31 [PELS]
701
775
+
Glu
CTC
[ENA]
¡û
>W1911579174
PELT01000049
Deinococcota
Thermus scotoductus 30_S30 [PELT]
701
775
+
Glu
CTC
[ENA]
¡û
>W1911579214
PELU01000015
Deinococcota
Thermus scotoductus 29_S29 [PELU]
5239
5313
+
Glu
CTC
[ENA]
¡û
>W1911579294
PELV01000377
Deinococcota
Thermus scotoductus 28_S28 [PELV]
21250
21176
-
Glu
CTC
[ENA]
¡û
>W1911579343
PELW01000383
Deinococcota
Thermus scotoductus 27_S27 [PELW]
33237
33163
-
Glu
CTC
[ENA]
¡û
>W1911579399
PELX01000355
Deinococcota
Thermus scotoductus 26_S26 [PELX]
699
773
+
Glu
CTC
[ENA]
¡û
>W1911579445
PELY01000444
Deinococcota
Thermus scotoductus 25_S25 [PELY]
31164
31238
+
Glu
CTC
[ENA]
¡û
>W1911579460
PELZ01000053
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
289
215
-
Glu
CTC
[ENA]
¡û
>W1911579496
PEMA01000050
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
701
775
+
Glu
CTC
[ENA]
¡û
>W1911579553
PEMB01000068
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
699
773
+
Glu
CTC
[ENA]
¡û
>W1911579602
PEMC01000053
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
4320
4246
-
Glu
CTC
[ENA]
¡û
>W1911579647
PEMD01000045
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
699
773
+
Glu
CTC
[ENA]
¡û
>W1911579691
PEME01000046
Deinococcota
Thermus scotoductus 19_S19 [PEME]
701
775
+
Glu
CTC
[ENA]
¡û
>W1911579740
PEMF01000014
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
2248
2174
-
Glu
CTC
[ENA]
¡û
>W1911579782
PEMG01000011
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
5243
5317
+
Glu
CTC
[ENA]
¡û
>W1911579870
PEMH01000382
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
4386
4312
-
Glu
CTC
[ENA]
¡û
>W1911579876
PEMI01000014
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
2183
2109
-
Glu
CTC
[ENA]
¡û
>W1911579944
PEMJ01000122
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
21302
21228
-
Glu
CTC
[ENA]
¡û
>W1911579979
PEMK01000056
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
4230
4156
-
Glu
CTC
[ENA]
¡û
>W1911580026
PEML01000063
Deinococcota
Thermus scotoductus 12_S12 [PEML]
699
773
+
Glu
CTC
[ENA]
¡û
>W1911580079
PEMM01000059
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
701
775
+
Glu
CTC
[ENA]
¡û
>W1911580157
PEMN01000361
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
9659
9733
+
Glu
CTC
[ENA]
¡û
>W1911580163
PEMO01000009
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
1895
1821
-
Glu
CTC
[ENA]
¡û
>W1911580210
PEMP01000007
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
2183
2109
-
Glu
CTC
[ENA]
¡û
>W1911580260
PEMQ01000036
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
960
1034
+
Glu
CTC
[ENA]
¡û
>W1911580323
PEMR01000049
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
701
775
+
Glu
CTC
[ENA]
¡û
>W1911580400
PEMS01000445
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
5745
5819
+
Glu
CTC
[ENA]
¡û
>W1911580415
PEMT01000049
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
4241
4167
-
Glu
CTC
[ENA]
¡û
>W1911580454
PEMU01000035
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
701
775
+
Glu
CTC
[ENA]
¡û
>W1911580543
PEMV01000342
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
7661
7587
-
Glu
CTC
[ENA]
¡û
>W1911580590
PEMW01000480
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
5226
5300
+
Glu
CTC
[ENA]
¡û
>W1810268430
PRDA01000010
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
22472
22398
-
Glu
CTC
[ENA]
¡û
>W1810605093
QGMX01000003
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
35866
35792
-
Glu
CTC
[ENA]
¡û
>ENV09004150
ADKJ01000087
Hot springs metagenome ctg_1106445192081
1014
1088
+
Glu
CTC
[ENA]
¡û
>W1511312776
JPSL02000038
Deinococcota
Thermus filiformis ATCC 43280 [JPSL]
98913
98987
+
Glu
CTC
[ENA]
¡û
>W1511401698
JTJB01000030
Deinococcota
Thermus sp. 2.9 [JTJB]
52802
52728
-
Glu
CTC
[ENA]
¡û
>C11123032
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
88532
88606
+
Glu
CTC
[Ensembl]
¡û
>C121006387
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
56485
56559
+
Glu
CTC
[Ensembl]
¡û
>C161028689
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
2021808
2021734
-
Glu
CTC
-
¡û
>W1610045337
BBBL01000278
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
2416
2490
+
Glu
CTC
[ENA]
¡û
>W1610045406
BBBN01000124
Deinococcota
Thermus sp. JCM 17653 [BBBN]
2726
2652
-
Glu
CTC
[ENA]
¡û
>C131002380
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
38986
39060
+
Glu
CTC
[Ensembl]
¡û
>W1610651367
LJJR01000005
Deinococcota
Thermus scotoductus [LJJR]
60191
60265
+
Glu
CTC
[ENA]
¡û
>W1710042178
BBBL01000278
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
2416
2490
+
Glu
CTC
[ENA]
¡û
>W1710042247
BBBN01000124
Deinococcota
Thermus sp. JCM 17653 [BBBN]
2726
2652
-
Glu
CTC
[ENA]
¡û
>W1710514655
FNBC01000023
Deinococcota
Thermus arciformis [FNBC]
23326
23252
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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