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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = CTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456531 (72 seq.)
>W1710787538
LJJR01000023
Deinococcota
Thermus scotoductus [LJJR]
3675
3600
-
Lys
CTT
[ENA]
¡û
>C171047193
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
611821
611896
+
Lys
CTT
-
¡û
>W131160708
AQWU01000036
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
2331
2406
+
Lys
CTT
[ENA]
¡û
>W131167510
ARDI01000003
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
153917
153992
+
Lys
CTT
[ENA]
¡û
>W131177898
ARLD01000074
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
35467
35542
+
Lys
CTT
[ENA]
¡û
>W131218114
ATXJ01000023
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
359
434
+
Lys
CTT
[ENA]
¡û
>WENV180013042
FMSI01040714
[FMSI] soil metagenome; Soil
3
78
+
Lys
CTT
[ENA]
¢þ
>WENV180014210
FPIC01098864
[FPIC] soil metagenome; Soil
3
78
+
Lys
CTT
[ENA]
¢þ
>WENV180015084
FQKF010316090
[FQKF] soil metagenome; Soil
76
1
-
Lys
CTT
[ENA]
¢þ
>WENV180037077
FVAA010583747
[FVAA] soil metagenome; Soil
76
1
-
Lys
CTT
[ENA]
¢þ
>W141080521
ATNI01000074
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
89860
89935
+
Lys
CTT
[ENA]
¡û
>WENV181404866
OGCB01000916
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
4521
4446
-
Lys
CTT
[ENA]
¢þ
>WENV181405365
OGCE01000032
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
23811
23736
-
Lys
CTT
[ENA]
¢þ
>WENV181408239
OGCH01001089
[OGCH] hot springs metagenome; hot springs
9879
9954
+
Lys
CTT
[ENA]
¢þ
>W08011584
ABVK01000003
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
139464
139392
-
Lys
CTT
[ENA]
¡û
>C191159662
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
1450795
1450870
+
Lys
CTT
-
¡û
>W141818243
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
1382097
1382172
+
Lys
CTT
[ENA]
¡û
>W141818307
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
861622
861547
-
Lys
CTT
[ENA]
¡û
>W141820360
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
1713340
1713415
+
Lys
CTT
[ENA]
¡û
>W141820743
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
1293028
1293103
+
Lys
CTT
[ENA]
¡û
>W1911578796
PELL01000155
Deinococcota
Thermus scotoductus 39_S39 [PELL]
15668
15743
+
Lys
CTT
[ENA]
¡û
>W1911578838
PELM01000066
Deinococcota
Thermus scotoductus 38_S38 [PELM]
15513
15588
+
Lys
CTT
[ENA]
¡û
>W1911578887
PELN01000099
Deinococcota
Thermus scotoductus 37_S37 [PELN]
16003
16078
+
Lys
CTT
[ENA]
¡û
>W1911578935
PELO01000063
Deinococcota
Thermus scotoductus 35_S35 [PELO]
4442
4367
-
Lys
CTT
[ENA]
¡û
>W1911578968
PELP01000021
Deinococcota
Thermus scotoductus 34_S34 [PELP]
4421
4346
-
Lys
CTT
[ENA]
¡û
>W1911579028
PELQ01000050
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
4416
4341
-
Lys
CTT
[ENA]
¡û
>W1911579085
PELR01000177
Deinococcota
Thermus scotoductus 32_S32 [PELR]
15974
16049
+
Lys
CTT
[ENA]
¡û
>W1911579117
PELS01000045
Deinococcota
Thermus scotoductus 31_S31 [PELS]
4442
4367
-
Lys
CTT
[ENA]
¡û
>W1911579180
PELT01000061
Deinococcota
Thermus scotoductus 30_S30 [PELT]
4441
4366
-
Lys
CTT
[ENA]
¡û
>W1911579251
PELU01000445
Deinococcota
Thermus scotoductus 29_S29 [PELU]
4416
4341
-
Lys
CTT
[ENA]
¡û
>W1911579259
PELV01000010
Deinococcota
Thermus scotoductus 28_S28 [PELV]
4416
4341
-
Lys
CTT
[ENA]
¡û
>W1911579307
PELW01000022
Deinococcota
Thermus scotoductus 27_S27 [PELW]
4432
4357
-
Lys
CTT
[ENA]
¡û
>W1911579364
PELX01000054
Deinococcota
Thermus scotoductus 26_S26 [PELX]
4443
4368
-
Lys
CTT
[ENA]
¡û
>W1911579427
PELY01000133
Deinococcota
Thermus scotoductus 25_S25 [PELY]
4416
4341
-
Lys
CTT
[ENA]
¡û
>W1911579450
PELZ01000011
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
16514
16589
+
Lys
CTT
[ENA]
¡û
>W1911579498
PEMA01000053
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
4446
4371
-
Lys
CTT
[ENA]
¡û
>W1911579551
PEMB01000063
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
596
671
+
Lys
CTT
[ENA]
¡û
>W1911579606
PEMC01000064
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
210
285
+
Lys
CTT
[ENA]
¡û
>W1911579645
PEMD01000043
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
4441
4366
-
Lys
CTT
[ENA]
¡û
>W1911579689
PEME01000045
Deinococcota
Thermus scotoductus 19_S19 [PEME]
4441
4366
-
Lys
CTT
[ENA]
¡û
>W1911579748
PEMF01000084
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
1705
1630
-
Lys
CTT
[ENA]
¡û
>W1911579825
PEMG01000473
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
21016
21091
+
Lys
CTT
[ENA]
¡û
>W1911579842
PEMH01000074
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
2040
1965
-
Lys
CTT
[ENA]
¡û
>W1911579909
PEMI01000384
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
4437
4362
-
Lys
CTT
[ENA]
¡û
>W1911579933
PEMJ01000051
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
202
277
+
Lys
CTT
[ENA]
¡û
>W1911579977
PEMK01000051
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
4444
4369
-
Lys
CTT
[ENA]
¡û
>W1911580030
PEML01000073
Deinococcota
Thermus scotoductus 12_S12 [PEML]
4430
4355
-
Lys
CTT
[ENA]
¡û
>W1911580076
PEMM01000053
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
597
672
+
Lys
CTT
[ENA]
¡û
>W1911580125
PEMN01000017
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
2083
2158
+
Lys
CTT
[ENA]
¡û
>W1911580179
PEMO01000122
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
15962
16037
+
Lys
CTT
[ENA]
¡û
>W1911580233
PEMP01000188
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
1690
1615
-
Lys
CTT
[ENA]
¡û
>W1911580258
PEMQ01000031
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
210
285
+
Lys
CTT
[ENA]
¡û
>W1911580309
PEMR01000006
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
6961
6886
-
Lys
CTT
[ENA]
¡û
>W1911580369
PEMS01000155
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
4428
4353
-
Lys
CTT
[ENA]
¡û
>W1911580418
PEMT01000054
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
4430
4355
-
Lys
CTT
[ENA]
¡û
>W1911580456
PEMU01000038
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
4508
4433
-
Lys
CTT
[ENA]
¡û
>W1911580513
PEMV01000137
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
1699
1624
-
Lys
CTT
[ENA]
¡û
>W1911580583
PEMW01000442
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
4416
4341
-
Lys
CTT
[ENA]
¡û
>W1810268444
PRDA01000022
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
134
209
+
Lys
CTT
[ENA]
¡û
>W1810605083
QGMX01000002
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
200207
200282
+
Lys
CTT
[ENA]
¡û
>W1810889145
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
872120
872195
+
Lys
CTT
[ENA]
¡û
>ENV09004161
ADKJ01000432
Hot springs metagenome ctg_1106445192081
1116
1191
+
Lys
CTT
[ENA]
¡û
>W1511312806
JPSL02000040
Deinococcota
Thermus filiformis ATCC 43280 [JPSL]
129894
129819
-
Lys
CTT
[ENA]
¡û
>W1511401701
JTJB01000031
Deinococcota
Thermus sp. 2.9 [JTJB]
51138
51063
-
Lys
CTT
[ENA]
¡û
>C11123058
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
1999105
1999180
+
Lys
CTT
[Ensembl]
¡û
>C121006432
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
580971
580896
-
Lys
CTT
[Ensembl]
¡û
>C161028708
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
425476
425401
-
Lys
CTT
-
¡û
>W1610045394
BBBN01000024
Deinococcota
Thermus sp. JCM 17653 [BBBN]
328
253
-
Lys
CTT
[ENA]
¡û
>C131002420
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
1615389
1615314
-
Lys
CTT
[Ensembl]
¡û
>W1610651393
LJJR01000023
Deinococcota
Thermus scotoductus [LJJR]
3675
3600
-
Lys
CTT
[ENA]
¡û
>W1710042235
BBBN01000024
Deinococcota
Thermus sp. JCM 17653 [BBBN]
328
253
-
Lys
CTT
[ENA]
¡û
>W1710514626
FNBC01000001
Deinococcota
Thermus arciformis [FNBC]
106818
106743
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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