This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = GAA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456539 (63 seq.)
>W1710787542
LJJR01000033
Deinococcota
Thermus scotoductus [LJJR]
23858
23933
+
Phe
GAA
[ENA]
¡û
>C171047221
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
1157315
1157240
-
Phe
GAA
-
¡û
>W131155623
AQOS01000040
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
6432
6357
-
Phe
GAA
[ENA]
¡û
>W131167491
ARDI01000001
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
158934
158859
-
Phe
GAA
[ENA]
¡û
>W131177897
ARLD01000074
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
1891
1966
+
Phe
GAA
[ENA]
¡û
>W131218116
ATXJ01000025
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
11292
11217
-
Phe
GAA
[ENA]
¡û
>W131231947
AUIW01000003
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
70656
70731
+
Phe
GAA
[ENA]
¡û
>C025879
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
988001
988076
+
Phe
GAA
[Ensembl]
¡û
>C025933
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
1311554
1311629
+
Phe
GAA
[Ensembl]
¡û
>WENV180014146
FPIC01067925
[FPIC] soil metagenome; Soil
84
159
+
Phe
GAA
[ENA]
¢þ
>W141080520
ATNI01000074
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
44748
44823
+
Phe
GAA
[ENA]
¡û
>WENV181408351
OGCH01001996
[OGCH] hot springs metagenome; hot springs
1555
1480
-
Phe
GAA
[ENA]
¢þ
>W08011583
ABVK01000003
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
184775
184703
-
Phe
GAA
[ENA]
¡û
>W141186989
AYLD01000221
Bacillota
Firmicutes bacterium JGI 0000112-M16 [AYLD]
1260
1185
-
Phe
GAA
[ENA]
¡û
>C181003573
AP017920
Deinococcota
Thermus thermophilus TMY [AP017920]
1851130
1851055
-
Phe
GAA
-
¡û
>C191159661
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
1407012
1407087
+
Phe
GAA
-
¡û
>C191190035
LR027517
Deinococcota
Thermus thermophilus [LR027517]
244201
244126
-
Phe
GAA
-
¡û
>W141818306
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
905605
905530
-
Phe
GAA
[ENA]
¡û
>W141820359
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
1661027
1661102
+
Phe
GAA
[ENA]
¡û
>W141820742
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
1245707
1245782
+
Phe
GAA
[ENA]
¡û
>W1911578856
PELM01000420
Deinococcota
Thermus scotoductus 38_S38 [PELM]
8173
8248
+
Phe
GAA
[ENA]
¡û
>W1911578960
PELO01000305
Deinococcota
Thermus scotoductus 35_S35 [PELO]
868
793
-
Phe
GAA
[ENA]
¡û
>W1911579013
PELP01000580
Deinococcota
Thermus scotoductus 34_S34 [PELP]
3112
3187
+
Phe
GAA
[ENA]
¡û
>W1911579061
PELQ01000346
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
1410
1335
-
Phe
GAA
[ENA]
¡û
>W1911579124
PELS01000110
Deinococcota
Thermus scotoductus 31_S31 [PELS]
1455
1380
-
Phe
GAA
[ENA]
¡û
>W1911579201
PELT01000286
Deinococcota
Thermus scotoductus 30_S30 [PELT]
1400
1325
-
Phe
GAA
[ENA]
¡û
>W1911579306
PELW01000009
Deinococcota
Thermus scotoductus 27_S27 [PELW]
4720
4645
-
Phe
GAA
[ENA]
¡û
>W1911579392
PELX01000315
Deinococcota
Thermus scotoductus 26_S26 [PELX]
870
795
-
Phe
GAA
[ENA]
¡û
>W1911579523
PEMA01000298
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
1284
1209
-
Phe
GAA
[ENA]
¡û
>W1911579577
PEMB01000338
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
9777
9852
+
Phe
GAA
[ENA]
¡û
>W1911579610
PEMC01000099
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
1284
1209
-
Phe
GAA
[ENA]
¡û
>W1911579678
PEMD01000300
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
868
793
-
Phe
GAA
[ENA]
¡û
>W1911579719
PEME01000320
Deinococcota
Thermus scotoductus 19_S19 [PEME]
3625
3550
-
Phe
GAA
[ENA]
¡û
>W1911579834
PEMH01000042
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
3558
3633
+
Phe
GAA
[ENA]
¡û
>W1911580002
PEMK01000286
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
1325
1250
-
Phe
GAA
[ENA]
¡û
>W1911580050
PEML01000294
Deinococcota
Thermus scotoductus 12_S12 [PEML]
868
793
-
Phe
GAA
[ENA]
¡û
>W1911580102
PEMM01000267
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
1481
1406
-
Phe
GAA
[ENA]
¡û
>W1911580299
PEMQ01000292
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
870
795
-
Phe
GAA
[ENA]
¡û
>W1911580341
PEMR01000252
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
3620
3545
-
Phe
GAA
[ENA]
¡û
>W1911580395
PEMS01000416
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
3111
3186
+
Phe
GAA
[ENA]
¡û
>W1911580436
PEMT01000298
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
1416
1341
-
Phe
GAA
[ENA]
¡û
>W1911580493
PEMU01000326
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
3033
2958
-
Phe
GAA
[ENA]
¡û
>W1911580531
PEMV01000305
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
1389
1314
-
Phe
GAA
[ENA]
¡û
>W1810268427
PRDA01000007
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
45806
45731
-
Phe
GAA
[ENA]
¡û
>W1810605082
QGMX01000002
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
153386
153461
+
Phe
GAA
[ENA]
¡û
>ENV09004198
ADKJ01001549
Hot springs metagenome ctg_1106445192081
2300
2375
+
Phe
GAA
[ENA]
¡û
>C11114424
CP002630
Deinococcota
Marinithermus hydrothermalis DSM 14884 [CP002630]
418316
418391
+
Phe
GAA
[Ensembl]
¡û
>W1511312774
JPSL02000037
Deinococcota
Thermus filiformis ATCC 43280 [JPSL]
134625
134550
-
Phe
GAA
[ENA]
¡û
>W1511401681
JTJB01000001
Deinococcota
Thermus sp. 2.9 [JTJB]
76922
76847
-
Phe
GAA
[ENA]
¡û
>C11123057
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
1955042
1955117
+
Phe
GAA
[Ensembl]
¡û
>C11123186
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
1337253
1337328
+
Phe
GAA
[Ensembl]
¡û
>C121006431
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
626286
626211
-
Phe
GAA
[Ensembl]
¡û
>C121009755
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
594752
594677
-
Phe
GAA
[Ensembl]
¡û
>C161028707
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
470787
470712
-
Phe
GAA
-
¡û
>C161067112
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
675411
675336
-
Phe
GAA
[Ensembl]
¡û
>W121056039
AIJQ01000012
Deinococcota
Thermus parvatiensis RL [AIJQ]
26487
26562
+
Phe
GAA
[ENA]
¡û
>W1610045325
BBBL01000156
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
2050
2125
+
Phe
GAA
[ENA]
¡û
>W1610045431
BBBN01000595
Deinococcota
Thermus sp. JCM 17653 [BBBN]
345
420
+
Phe
GAA
[ENA]
¡û
>C131002428
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
402264
402189
-
Phe
GAA
[Ensembl]
¡û
>W1610651397
LJJR01000033
Deinococcota
Thermus scotoductus [LJJR]
23858
23933
+
Phe
GAA
[ENA]
¡û
>W1710042166
BBBL01000156
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
2050
2125
+
Phe
GAA
[ENA]
¡û
>W1710042272
BBBN01000595
Deinococcota
Thermus sp. JCM 17653 [BBBN]
345
420
+
Phe
GAA
[ENA]
¡û
>W1710514646
FNBC01000009
Deinococcota
Thermus arciformis [FNBC]
25541
25466
-
Phe
GAA
[ENA]
¡û
Identical group No.460913 (7 seq.)
>C08010688
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
1239361
1239434
+
Phe
GAA
[Ensembl]
¡û
>W141557077
JHUV01000016
Aquificota
Sulfurihydrogenibium subterraneum DSM 15120 [JHUV]
10454
10527
+
Phe
GAA
[ENA]
¡û
>W09107726
ABLS01000018
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [ABLS]
19906
19979
+
Phe
GAA
[ENA]
¡û
>W09114565
ABZS01000076
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
6899
6826
-
Phe
GAA
[ENA]
¡û
>C09109127
CP001229
Aquificota
Sulfurihydrogenibium azorense Az-Fu1 [CP001229]
374189
374116
-
Phe
GAA
[Ensembl]
¡û
>ENV09004205
ADKJ01001606
Hot springs metagenome ctg_1106445192081
1849
1922
+
Phe
GAA
[ENA]
¡û
>ENV09004229
ADKK01000221
Hot springs metagenome ctg_1106445177583
3772
3699
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK