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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = GAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275259 (62 seq.)
>W1710787530
LJJR01000013
Deinococcota
Thermus scotoductus [LJJR]
42771
42695
-
Val
GAC
[ENA]
¡û
>C171047209
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
1709900
1709976
+
Val
GAC
-
¡û
>W131160730
AQWU01000067
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
32220
32296
+
Val
GAC
[ENA]
¡û
>W131167506
ARDI01000003
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
38675
38751
+
Val
GAC
[ENA]
¡û
>W131177916
ARLD01000087
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
43918
43994
+
Val
GAC
[ENA]
¡û
>W131218097
ATXJ01000005
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
84904
84828
-
Val
GAC
[ENA]
¡û
>W131231966
AUIW01000012
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
13652
13576
-
Val
GAC
[ENA]
¡û
>WENV180013224
FMSI01057444
[FMSI] soil metagenome; Soil
77
1
-
Val
GAC
[ENA]
¢þ
>WENV180014123
FPIC01059659
[FPIC] soil metagenome; Soil
77
1
-
Val
GAC
[ENA]
¢þ
>WENV180015275
FQKF010487078
[FQKF] soil metagenome; Soil
66
142
+
Val
GAC
[ENA]
¢þ
>WENV180036510
FVAA010140934
[FVAA] soil metagenome; Soil
77
1
-
Val
GAC
[ENA]
¢þ
>W141080496
ATNI01000020
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
18216
18292
+
Val
GAC
[ENA]
¡û
>WENV181285639
OFGS01006486
[OFGS] hot springs metagenome; Water and soil
154
230
+
Val
GAC
[ENA]
¢þ
>WENV181404692
OGCB01000060
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
27798
27874
+
Val
GAC
[ENA]
¢þ
>WENV181405370
OGCE01000044
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
27813
27889
+
Val
GAC
[ENA]
¢þ
>WENV181408125
OGCH01000640
[OGCH] hot springs metagenome; hot springs
13745
13821
+
Val
GAC
[ENA]
¢þ
>W08011559
ABVK01000001
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
73816
73892
+
Val
GAC
[ENA]
¡û
>WENV170700751
LJSS01000584
[LJSS] hot springs metagenome; water from Lobios Hot Spring
1407
1331
-
Val
GAC
[ENA]
¢þ
>C191159656
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
1230920
1230996
+
Val
GAC
-
¡û
>W141818301
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
1006103
1006027
-
Val
GAC
[ENA]
¡û
>W141820354
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
1550203
1550279
+
Val
GAC
[ENA]
¡û
>W141820734
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
144481
144557
+
Val
GAC
[ENA]
¡û
>W1911578815
PELL01000377
Deinococcota
Thermus scotoductus 39_S39 [PELL]
11214
11138
-
Val
GAC
[ENA]
¡û
>W1911578859
PELM01000441
Deinococcota
Thermus scotoductus 38_S38 [PELM]
329
405
+
Val
GAC
[ENA]
¡û
>W1911578953
PELO01000290
Deinococcota
Thermus scotoductus 35_S35 [PELO]
11419
11495
+
Val
GAC
[ENA]
¡û
>W1911579058
PELQ01000340
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
3218
3142
-
Val
GAC
[ENA]
¡û
>W1911579148
PELS01000281
Deinococcota
Thermus scotoductus 31_S31 [PELS]
3218
3142
-
Val
GAC
[ENA]
¡û
>W1911579196
PELT01000275
Deinococcota
Thermus scotoductus 30_S30 [PELT]
3218
3142
-
Val
GAC
[ENA]
¡û
>W1911579387
PELX01000305
Deinococcota
Thermus scotoductus 26_S26 [PELX]
3218
3142
-
Val
GAC
[ENA]
¡û
>W1911579417
PELY01000059
Deinococcota
Thermus scotoductus 25_S25 [PELY]
467
543
+
Val
GAC
[ENA]
¡û
>W1911579476
PELZ01000310
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
418
494
+
Val
GAC
[ENA]
¡û
>W1911579520
PEMA01000285
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
3218
3142
-
Val
GAC
[ENA]
¡û
>W1911579570
PEMB01000316
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
3218
3142
-
Val
GAC
[ENA]
¡û
>W1911579621
PEMC01000297
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
3218
3142
-
Val
GAC
[ENA]
¡û
>W1911579670
PEMD01000281
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
3218
3142
-
Val
GAC
[ENA]
¡û
>W1911579726
PEME01000323
Deinococcota
Thermus scotoductus 19_S19 [PEME]
3218
3142
-
Val
GAC
[ENA]
¡û
>W1911579820
PEMG01000435
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
272
348
+
Val
GAC
[ENA]
¡û
>W1911579862
PEMH01000355
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
10834
10910
+
Val
GAC
[ENA]
¡û
>W1911579923
PEMJ01000011
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
11414
11490
+
Val
GAC
[ENA]
¡û
>W1911579999
PEMK01000280
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
3218
3142
-
Val
GAC
[ENA]
¡û
>W1911580046
PEML01000285
Deinococcota
Thermus scotoductus 12_S12 [PEML]
3218
3142
-
Val
GAC
[ENA]
¡û
>W1911580096
PEMM01000259
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
3218
3142
-
Val
GAC
[ENA]
¡û
>W1911580292
PEMQ01000276
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
11415
11491
+
Val
GAC
[ENA]
¡û
>W1911580348
PEMR01000258
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
3218
3142
-
Val
GAC
[ENA]
¡û
>W1911580431
PEMT01000293
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
3218
3142
-
Val
GAC
[ENA]
¡û
>W1911580487
PEMU01000292
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
3218
3142
-
Val
GAC
[ENA]
¡û
>W1911580535
PEMV01000308
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
1156
1080
-
Val
GAC
[ENA]
¡û
>W1810268440
PRDA01000019
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
194
270
+
Val
GAC
[ENA]
¡û
>W1810605077
QGMX01000002
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
51566
51642
+
Val
GAC
[ENA]
¡û
>W1810889161
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
1742148
1742224
+
Val
GAC
[ENA]
¡û
>ENV09004154
ADKJ01000123
Hot springs metagenome ctg_1106445192081
537
613
+
Val
GAC
[ENA]
¡û
>W1511401704
JTJB01000034
Deinococcota
Thermus sp. 2.9 [JTJB]
24862
24938
+
Val
GAC
[ENA]
¡û
>C11123052
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
1860459
1860535
+
Val
GAC
[Ensembl]
¡û
>C121006423
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
1759751
1759675
-
Val
GAC
[Ensembl]
¡û
>C161028694
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
1675429
1675353
-
Val
GAC
-
¡û
>W1610045328
BBBL01000202
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
1261
1185
-
Val
GAC
[ENA]
¡û
>W1610045417
BBBN01000235
Deinococcota
Thermus sp. JCM 17653 [BBBN]
515
439
-
Val
GAC
[ENA]
¡û
>C131002415
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
1738831
1738755
-
Val
GAC
[Ensembl]
¡û
>W1610651385
LJJR01000013
Deinococcota
Thermus scotoductus [LJJR]
42771
42695
-
Val
GAC
[ENA]
¡û
>W1710042169
BBBL01000202
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
1261
1185
-
Val
GAC
[ENA]
¡û
>W1710042258
BBBN01000235
Deinococcota
Thermus sp. JCM 17653 [BBBN]
515
439
-
Val
GAC
[ENA]
¡û
>W1710514641
FNBC01000006
Deinococcota
Thermus arciformis [FNBC]
53479
53403
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK