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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = GAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113097 (67 seq.)
>W1710787537
LJJR01000019
Deinococcota
Thermus scotoductus [LJJR]
30274
30360
+
Leu
GAG
[ENA]
¡û
>C171047219
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
1239614
1239528
-
Leu
GAG
-
¡û
>W131160704
AQWU01000027
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
338
424
+
Leu
GAG
[ENA]
¡û
>W131177884
ARLD01000046
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
11661
11575
-
Leu
GAG
[ENA]
¡û
>W131218104
ATXJ01000008
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
84561
84475
-
Leu
GAG
[ENA]
¡û
>W131231968
AUIW01000015
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
17042
17128
+
Leu
GAG
[ENA]
¡û
>W141080494
ATNI01000017
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
9576
9490
-
Leu
GAG
[ENA]
¡û
>WENV181285650
OFGS01007672
[OFGS] hot springs metagenome; Water and soil
205
119
-
Leu
GAG
[ENA]
¢þ
>WENV181404783
OGCB01000257
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
3552
3466
-
Leu
GAG
[ENA]
¢þ
>WENV181405349
OGCE01000010
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
12009
12095
+
Leu
GAG
[ENA]
¢þ
>WENV181408353
OGCH01002023
[OGCH] hot springs metagenome; hot springs
3429
3343
-
Leu
GAG
[ENA]
¢þ
>W08011593
ABVK01000005
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
156239
156156
-
Leu
GAG
[ENA]
¡û
>WENV170700714
LJSS01000349
[LJSS] hot springs metagenome; water from Lobios Hot Spring
5107
5021
-
Leu
GAG
[ENA]
¢þ
>C191159679
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
2128518
2128432
-
Leu
GAG
-
¡û
>W141818260
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
2053120
2053034
-
Leu
GAG
[ENA]
¡û
>W141818278
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
223618
223704
+
Leu
GAG
[ENA]
¡û
>W141820378
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
287478
287392
-
Leu
GAG
[ENA]
¡û
>W141820759
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
1944615
1944529
-
Leu
GAG
[ENA]
¡û
>W1911578797
PELL01000176
Deinococcota
Thermus scotoductus 39_S39 [PELL]
802
716
-
Leu
GAG
[ENA]
¡û
>W1911578892
PELN01000113
Deinococcota
Thermus scotoductus 37_S37 [PELN]
1284
1370
+
Leu
GAG
[ENA]
¡û
>W1911578937
PELO01000112
Deinococcota
Thermus scotoductus 35_S35 [PELO]
1322
1408
+
Leu
GAG
[ENA]
¡û
>W1911579042
PELQ01000145
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
1582
1496
-
Leu
GAG
[ENA]
¡û
>W1911579081
PELR01000105
Deinococcota
Thermus scotoductus 32_S32 [PELR]
1630
1544
-
Leu
GAG
[ENA]
¡û
>W1911579127
PELS01000135
Deinococcota
Thermus scotoductus 31_S31 [PELS]
1584
1498
-
Leu
GAG
[ENA]
¡û
>W1911579185
PELT01000138
Deinococcota
Thermus scotoductus 30_S30 [PELT]
1568
1482
-
Leu
GAG
[ENA]
¡û
>W1911579224
PELU01000135
Deinococcota
Thermus scotoductus 29_S29 [PELU]
1284
1370
+
Leu
GAG
[ENA]
¡û
>W1911579276
PELV01000196
Deinococcota
Thermus scotoductus 28_S28 [PELV]
720
806
+
Leu
GAG
[ENA]
¡û
>W1911579332
PELW01000288
Deinococcota
Thermus scotoductus 27_S27 [PELW]
1647
1561
-
Leu
GAG
[ENA]
¡û
>W1911579377
PELX01000147
Deinococcota
Thermus scotoductus 26_S26 [PELX]
639
725
+
Leu
GAG
[ENA]
¡û
>W1911579432
PELY01000218
Deinococcota
Thermus scotoductus 25_S25 [PELY]
802
716
-
Leu
GAG
[ENA]
¡û
>W1911579477
PELZ01000311
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
191
277
+
Leu
GAG
[ENA]
¡û
>W1911579506
PEMA01000137
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
1584
1498
-
Leu
GAG
[ENA]
¡û
>W1911579561
PEMB01000163
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
201
287
+
Leu
GAG
[ENA]
¡û
>W1911579590
PEMC01000006
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
1582
1496
-
Leu
GAG
[ENA]
¡û
>W1911579659
PEMD01000139
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
1584
1498
-
Leu
GAG
[ENA]
¡û
>W1911579704
PEME01000135
Deinococcota
Thermus scotoductus 19_S19 [PEME]
1587
1501
-
Leu
GAG
[ENA]
¡û
>W1911579756
PEMF01000180
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
198
284
+
Leu
GAG
[ENA]
¡û
>W1911579784
PEMG01000013
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
877
791
-
Leu
GAG
[ENA]
¡û
>W1911579850
PEMH01000174
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
710
624
-
Leu
GAG
[ENA]
¡û
>W1911579913
PEMI01000398
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
1284
1370
+
Leu
GAG
[ENA]
¡û
>W1911579950
PEMJ01000163
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
622
708
+
Leu
GAG
[ENA]
¡û
>W1911579988
PEMK01000139
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
1585
1499
-
Leu
GAG
[ENA]
¡û
>W1911580032
PEML01000127
Deinococcota
Thermus scotoductus 12_S12 [PEML]
1612
1526
-
Leu
GAG
[ENA]
¡û
>W1911580085
PEMM01000119
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
722
808
+
Leu
GAG
[ENA]
¡û
>W1911580136
PEMN01000154
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
228
314
+
Leu
GAG
[ENA]
¡û
>W1911580178
PEMO01000121
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
1284
1370
+
Leu
GAG
[ENA]
¡û
>W1911580225
PEMP01000125
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
1284
1370
+
Leu
GAG
[ENA]
¡û
>W1911580270
PEMQ01000107
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
1614
1528
-
Leu
GAG
[ENA]
¡û
>W1911580310
PEMR01000008
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
1326
1412
+
Leu
GAG
[ENA]
¡û
>W1911580382
PEMS01000376
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
1722
1636
-
Leu
GAG
[ENA]
¡û
>W1911580424
PEMT01000140
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
1585
1499
-
Leu
GAG
[ENA]
¡û
>W1911580469
PEMU01000115
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
1586
1500
-
Leu
GAG
[ENA]
¡û
>W1911580515
PEMV01000148
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
1516
1430
-
Leu
GAG
[ENA]
¡û
>W1911580568
PEMW01000213
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
1455
1369
-
Leu
GAG
[ENA]
¡û
>W1810268446
PRDA01000025
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
35072
34986
-
Leu
GAG
[ENA]
¡û
>W1810605101
QGMX01000007
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
16793
16879
+
Leu
GAG
[ENA]
¡û
>ENV09004200
ADKJ01001553
Hot springs metagenome ctg_1106445192081
525
439
-
Leu
GAG
[ENA]
¡û
>W1511401695
JTJB01000026
Deinococcota
Thermus sp. 2.9 [JTJB]
9564
9650
+
Leu
GAG
[ENA]
¡û
>C11123076
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
292534
292448
-
Leu
GAG
[Ensembl]
¡û
>C121006406
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
1982341
1982427
+
Leu
GAG
[Ensembl]
¡û
>C161028710
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
201149
201063
-
Leu
GAG
-
¡û
>W1610045311
BBBL01000064
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
3497
3583
+
Leu
GAG
[ENA]
¡û
>W1610045392
BBBN01000010
Deinococcota
Thermus sp. JCM 17653 [BBBN]
11545
11459
-
Leu
GAG
[ENA]
¡û
>W1610651392
LJJR01000019
Deinococcota
Thermus scotoductus [LJJR]
30274
30360
+
Leu
GAG
[ENA]
¡û
>W1710042152
BBBL01000064
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
3497
3583
+
Leu
GAG
[ENA]
¡û
>W1710042233
BBBN01000010
Deinococcota
Thermus sp. JCM 17653 [BBBN]
11545
11459
-
Leu
GAG
[ENA]
¡û
>W1710514658
FNBC01000026
Deinococcota
Thermus arciformis [FNBC]
13541
13627
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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