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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = GAT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275268 (71 seq.)
>W1710787548
LJJR01000043
Deinococcota
Thermus scotoductus [LJJR]
92382
92306
-
Ile
GAT
[ENA]
¡û
>C171047232
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
571461
571385
-
Ile
GAT
-
¡û
>W131160712
AQWU01000042
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
23139
23063
-
Ile
GAT
[ENA]
¡û
>W131167531
ARDI01000017
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
22597
22521
-
Ile
GAT
[ENA]
¡û
>W131177880
ARLD01000013
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
1621
1545
-
Ile
GAT
[ENA]
¡û
>W131218072
ATXJ01000001
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
339739
339815
+
Ile
GAT
[ENA]
¡û
>W131231972
AUIW01000021
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
2903
2979
+
Ile
GAT
[ENA]
¡û
>W141080517
ATNI01000066
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
69
145
+
Ile
GAT
[ENA]
¡û
>WENV181405131
OGCB01015319
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
285
361
+
Ile
GAT
[ENA]
¢þ
>WENV181408779
OGCH01013459
[OGCH] hot springs metagenome; hot springs
439
363
-
Ile
GAT
[ENA]
¢þ
>WENV170700887
LJSS01005810
[LJSS] hot springs metagenome; water from Lobios Hot Spring
667
591
-
Ile
GAT
[ENA]
¢þ
>C191159675
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
2247410
2247486
+
Ile
GAT
-
¡û
>W141818256
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
2178931
2179007
+
Ile
GAT
[ENA]
¡û
>W141818322
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
121147
121071
-
Ile
GAT
[ENA]
¡û
>W141820344
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
400664
400740
+
Ile
GAT
[ENA]
¡û
>W141820730
JQNC01000002
Deinococcota
Thermus caliditerrae [JQNC]
2036
1960
-
Ile
GAT
[ENA]
¡û
>W141820731
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
170
246
+
Ile
GAT
[ENA]
¡û
>W141820756
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
2046226
2046302
+
Ile
GAT
[ENA]
¡û
>W1911578784
PELL01000029
Deinococcota
Thermus scotoductus 39_S39 [PELL]
588
664
+
Ile
GAT
[ENA]
¡û
>W1911578870
PELM01000489
Deinococcota
Thermus scotoductus 38_S38 [PELM]
189
265
+
Ile
GAT
[ENA]
¡û
>W1911578876
PELN01000032
Deinococcota
Thermus scotoductus 37_S37 [PELN]
5293
5217
-
Ile
GAT
[ENA]
¡û
>W1911578938
PELO01000112
Deinococcota
Thermus scotoductus 35_S35 [PELO]
759
683
-
Ile
GAT
[ENA]
¡û
>W1911578991
PELP01000292
Deinococcota
Thermus scotoductus 34_S34 [PELP]
644
720
+
Ile
GAT
[ENA]
¡û
>W1911579023
PELQ01000032
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
5293
5217
-
Ile
GAT
[ENA]
¡û
>W1911579073
PELR01000030
Deinococcota
Thermus scotoductus 32_S32 [PELR]
5293
5217
-
Ile
GAT
[ENA]
¡û
>W1911579116
PELS01000032
Deinococcota
Thermus scotoductus 31_S31 [PELS]
5293
5217
-
Ile
GAT
[ENA]
¡û
>W1911579188
PELT01000159
Deinococcota
Thermus scotoductus 30_S30 [PELT]
759
683
-
Ile
GAT
[ENA]
¡û
>W1911579217
PELU01000042
Deinococcota
Thermus scotoductus 29_S29 [PELU]
5293
5217
-
Ile
GAT
[ENA]
¡û
>W1911579278
PELV01000212
Deinococcota
Thermus scotoductus 28_S28 [PELV]
575
651
+
Ile
GAT
[ENA]
¡û
>W1911579314
PELW01000073
Deinococcota
Thermus scotoductus 27_S27 [PELW]
2742
2666
-
Ile
GAT
[ENA]
¡û
>W1911579380
PELX01000277
Deinococcota
Thermus scotoductus 26_S26 [PELX]
158
82
-
Ile
GAT
[ENA]
¡û
>W1911579412
PELY01000046
Deinococcota
Thermus scotoductus 25_S25 [PELY]
302
378
+
Ile
GAT
[ENA]
¡û
>W1911579470
PELZ01000165
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
182
258
+
Ile
GAT
[ENA]
¡û
>W1911579508
PEMA01000172
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
757
681
-
Ile
GAT
[ENA]
¡û
>W1911579563
PEMB01000201
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
483
559
+
Ile
GAT
[ENA]
¡û
>W1911579589
PEMC01000006
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
2145
2221
+
Ile
GAT
[ENA]
¡û
>W1911579661
PEMD01000162
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
800
724
-
Ile
GAT
[ENA]
¡û
>W1911579687
PEME01000030
Deinococcota
Thermus scotoductus 19_S19 [PEME]
5298
5222
-
Ile
GAT
[ENA]
¡û
>W1911579764
PEMF01000364
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
196
272
+
Ile
GAT
[ENA]
¡û
>W1911579822
PEMG01000447
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
2589
2665
+
Ile
GAT
[ENA]
¡û
>W1911579848
PEMH01000156
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
1331
1255
-
Ile
GAT
[ENA]
¡û
>W1911579898
PEMI01000244
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
16341
16265
-
Ile
GAT
[ENA]
¡û
>W1911579930
PEMJ01000032
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
4945
4869
-
Ile
GAT
[ENA]
¡û
>W1911579973
PEMK01000037
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
5324
5248
-
Ile
GAT
[ENA]
¡û
>W1911580036
PEML01000221
Deinococcota
Thermus scotoductus 12_S12 [PEML]
18802
18726
-
Ile
GAT
[ENA]
¡û
>W1911580086
PEMM01000119
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
159
83
-
Ile
GAT
[ENA]
¡û
>W1911580146
PEMN01000344
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
196
272
+
Ile
GAT
[ENA]
¡û
>W1911580167
PEMO01000032
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
5293
5217
-
Ile
GAT
[ENA]
¡û
>W1911580214
PEMP01000036
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
5294
5218
-
Ile
GAT
[ENA]
¡û
>W1911580273
PEMQ01000188
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
23087
23011
-
Ile
GAT
[ENA]
¡û
>W1911580311
PEMR01000008
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
763
687
-
Ile
GAT
[ENA]
¡û
>W1911580355
PEMS01000052
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
2653
2577
-
Ile
GAT
[ENA]
¡û
>W1911580427
PEMT01000170
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
759
683
-
Ile
GAT
[ENA]
¡û
>W1911580472
PEMU01000136
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
769
693
-
Ile
GAT
[ENA]
¡û
>W1911580519
PEMV01000185
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
759
683
-
Ile
GAT
[ENA]
¡û
>W1911580564
PEMW01000169
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
1836
1760
-
Ile
GAT
[ENA]
¡û
>W1810268460
PRDA01000051
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
369
293
-
Ile
GAT
[ENA]
¡û
>W1810605115
QGMX01000039
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
131
207
+
Ile
GAT
[ENA]
¡û
>W1810889158
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
1622588
1622664
+
Ile
GAT
[ENA]
¡û
>ENV09004195
ADKJ01001516
Hot springs metagenome ctg_1106445192081
866
790
-
Ile
GAT
[ENA]
¡û
>W1511312765
JPSL02000036
Deinococcota
Thermus filiformis ATCC 43280 [JPSL]
202495
202571
+
Ile
GAT
[ENA]
¡û
>W1511401721
JTJB01000049
Deinococcota
Thermus sp. 2.9 [JTJB]
17832
17908
+
Ile
GAT
[ENA]
¡û
>C11123042
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
412381
412457
+
Ile
GAT
[Ensembl]
¡û
>C121006420
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
1886081
1886005
-
Ile
GAT
[Ensembl]
¡û
>C161028691
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
1817500
1817424
-
Ile
GAT
-
¡û
>W1610045308
BBBL01000033
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
1487
1563
+
Ile
GAT
[ENA]
¡û
>W1610045401
BBBN01000079
Deinococcota
Thermus sp. JCM 17653 [BBBN]
860
936
+
Ile
GAT
[ENA]
¡û
>C131002399
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
1782054
1782130
+
Ile
GAT
[Ensembl]
¡û
>W1610651403
LJJR01000043
Deinococcota
Thermus scotoductus [LJJR]
92382
92306
-
Ile
GAT
[ENA]
¡û
>W1710042149
BBBL01000033
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
1487
1563
+
Ile
GAT
[ENA]
¡û
>W1710042242
BBBN01000079
Deinococcota
Thermus sp. JCM 17653 [BBBN]
860
936
+
Ile
GAT
[ENA]
¡û
Identical group No.279463 (11 seq.)
>C08010700
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
825281
825208
-
Ile
GAT
[Ensembl]
¡û
>C08010702
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
753082
753009
-
Ile
GAT
[Ensembl]
¡û
>C08010705
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
357650
357577
-
Ile
GAT
[Ensembl]
¡û
>W09107733
ABLS01000041
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [ABLS]
2877
2950
+
Ile
GAT
[ENA]
¡û
>W09114552
ABZS01000001
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
18833
18906
+
Ile
GAT
[ENA]
¡û
>W09114554
ABZS01000010
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
11801
11874
+
Ile
GAT
[ENA]
¡û
>W09114556
ABZS01000027
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
1633
1706
+
Ile
GAT
[ENA]
¡û
>W09114560
ABZS01000050
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
1633
1706
+
Ile
GAT
[ENA]
¡û
>W09114572
ABZS01000123
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
1633
1706
+
Ile
GAT
[ENA]
¡û
>ENV09004179
ADKJ01001085
Hot springs metagenome ctg_1106445192081
123
50
-
Ile
GAT
[ENA]
¡û
>ENV09004233
ADKK01000235
Hot springs metagenome ctg_1106445177583
79860
79933
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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