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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = GCA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655871 (76 seq.)
>W1710787529
LJJR01000013
Deinococcota
Thermus scotoductus [LJJR]
42852
42778
-
Cys
GCA
[ENA]
¡û
>C171047208
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
1709818
1709892
+
Cys
GCA
-
¡û
>W131155598
AQOS01000006
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
6406
6480
+
Cys
GCA
[ENA]
¡û
>W131167505
ARDI01000003
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
38593
38667
+
Cys
GCA
[ENA]
¡û
>W131177915
ARLD01000087
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
43837
43911
+
Cys
GCA
[ENA]
¡û
>W131231965
AUIW01000012
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
13733
13659
-
Cys
GCA
[ENA]
¡û
>C025871
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
107423
107497
+
Cys
GCA
[Ensembl]
¡û
>C025925
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
462567
462641
+
Cys
GCA
[Ensembl]
¡û
>W141080495
ATNI01000020
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
18135
18209
+
Cys
GCA
[ENA]
¡û
>W08011558
ABVK01000001
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
73733
73807
+
Cys
GCA
[ENA]
¡û
>WENV181228015
OFDN01109240
[OFDN] hot springs metagenome; Water
30
104
+
Cys
GCA
[ENA]
¢þ
>WENV181404691
OGCB01000060
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
27715
27789
+
Cys
GCA
[ENA]
¢þ
>WENV181405369
OGCE01000044
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
27730
27804
+
Cys
GCA
[ENA]
¢þ
>WENV181408124
OGCH01000640
[OGCH] hot springs metagenome; hot springs
13664
13738
+
Cys
GCA
[ENA]
¢þ
>WENV170700750
LJSS01000584
[LJSS] hot springs metagenome; water from Lobios Hot Spring
1488
1414
-
Cys
GCA
[ENA]
¢þ
>C181003591
AP017920
Deinococcota
Thermus thermophilus TMY [AP017920]
798218
798144
-
Cys
GCA
-
¡û
>C191159655
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
1230839
1230913
+
Cys
GCA
-
¡û
>C191190027
LR027517
Deinococcota
Thermus thermophilus [LR027517]
1176066
1175992
-
Cys
GCA
-
¡û
>W141818236
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
1237538
1237612
+
Cys
GCA
[ENA]
¡û
>W141818300
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
1006184
1006110
-
Cys
GCA
[ENA]
¡û
>W141820353
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
1550122
1550196
+
Cys
GCA
[ENA]
¡û
>W141820733
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
144399
144473
+
Cys
GCA
[ENA]
¡û
>W1911578814
PELL01000377
Deinococcota
Thermus scotoductus 39_S39 [PELL]
11295
11221
-
Cys
GCA
[ENA]
¡û
>W1911578858
PELM01000441
Deinococcota
Thermus scotoductus 38_S38 [PELM]
248
322
+
Cys
GCA
[ENA]
¡û
>W1911578910
PELN01000356
Deinococcota
Thermus scotoductus 37_S37 [PELN]
187
261
+
Cys
GCA
[ENA]
¡û
>W1911578952
PELO01000290
Deinococcota
Thermus scotoductus 35_S35 [PELO]
11338
11412
+
Cys
GCA
[ENA]
¡û
>W1911578976
PELP01000077
Deinococcota
Thermus scotoductus 34_S34 [PELP]
12365
12291
-
Cys
GCA
[ENA]
¡û
>W1911579057
PELQ01000340
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
3299
3225
-
Cys
GCA
[ENA]
¡û
>W1911579106
PELR01000365
Deinococcota
Thermus scotoductus 32_S32 [PELR]
12412
12338
-
Cys
GCA
[ENA]
¡û
>W1911579147
PELS01000281
Deinococcota
Thermus scotoductus 31_S31 [PELS]
3299
3225
-
Cys
GCA
[ENA]
¡û
>W1911579195
PELT01000275
Deinococcota
Thermus scotoductus 30_S30 [PELT]
3299
3225
-
Cys
GCA
[ENA]
¡û
>W1911579248
PELU01000435
Deinococcota
Thermus scotoductus 29_S29 [PELU]
187
261
+
Cys
GCA
[ENA]
¡û
>W1911579298
PELV01000402
Deinococcota
Thermus scotoductus 28_S28 [PELV]
8126
8200
+
Cys
GCA
[ENA]
¡û
>W1911579311
PELW01000055
Deinococcota
Thermus scotoductus 27_S27 [PELW]
12410
12336
-
Cys
GCA
[ENA]
¡û
>W1911579386
PELX01000305
Deinococcota
Thermus scotoductus 26_S26 [PELX]
3299
3225
-
Cys
GCA
[ENA]
¡û
>W1911579416
PELY01000059
Deinococcota
Thermus scotoductus 25_S25 [PELY]
386
460
+
Cys
GCA
[ENA]
¡û
>W1911579475
PELZ01000310
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
337
411
+
Cys
GCA
[ENA]
¡û
>W1911579519
PEMA01000285
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
3299
3225
-
Cys
GCA
[ENA]
¡û
>W1911579569
PEMB01000316
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
3299
3225
-
Cys
GCA
[ENA]
¡û
>W1911579620
PEMC01000297
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
3299
3225
-
Cys
GCA
[ENA]
¡û
>W1911579669
PEMD01000281
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
3299
3225
-
Cys
GCA
[ENA]
¡û
>W1911579725
PEME01000323
Deinococcota
Thermus scotoductus 19_S19 [PEME]
3299
3225
-
Cys
GCA
[ENA]
¡û
>W1911579752
PEMF01000122
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
7410
7484
+
Cys
GCA
[ENA]
¡û
>W1911579819
PEMG01000435
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
191
265
+
Cys
GCA
[ENA]
¡û
>W1911579861
PEMH01000355
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
10753
10827
+
Cys
GCA
[ENA]
¡û
>W1911579910
PEMI01000385
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
12409
12335
-
Cys
GCA
[ENA]
¡û
>W1911579922
PEMJ01000011
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
11333
11407
+
Cys
GCA
[ENA]
¡û
>W1911579998
PEMK01000280
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
3299
3225
-
Cys
GCA
[ENA]
¡û
>W1911580045
PEML01000285
Deinococcota
Thermus scotoductus 12_S12 [PEML]
3299
3225
-
Cys
GCA
[ENA]
¡û
>W1911580095
PEMM01000259
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
3299
3225
-
Cys
GCA
[ENA]
¡û
>W1911580138
PEMN01000188
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
6947
7021
+
Cys
GCA
[ENA]
¡û
>W1911580202
PEMO01000381
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
390
464
+
Cys
GCA
[ENA]
¡û
>W1911580246
PEMP01000386
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
187
261
+
Cys
GCA
[ENA]
¡û
>W1911580291
PEMQ01000276
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
11334
11408
+
Cys
GCA
[ENA]
¡û
>W1911580347
PEMR01000258
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
3299
3225
-
Cys
GCA
[ENA]
¡û
>W1911580363
PEMS01000099
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
9629
9703
+
Cys
GCA
[ENA]
¡û
>W1911580430
PEMT01000293
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
3299
3225
-
Cys
GCA
[ENA]
¡û
>W1911580486
PEMU01000292
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
3299
3225
-
Cys
GCA
[ENA]
¡û
>W1911580534
PEMV01000308
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
1237
1163
-
Cys
GCA
[ENA]
¡û
>W1911580580
PEMW01000398
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
12339
12265
-
Cys
GCA
[ENA]
¡û
>W1810268439
PRDA01000019
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
112
186
+
Cys
GCA
[ENA]
¡û
>W1810605076
QGMX01000002
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
51485
51559
+
Cys
GCA
[ENA]
¡û
>ENV09004153
ADKJ01000123
Hot springs metagenome ctg_1106445192081
454
528
+
Cys
GCA
[ENA]
¡û
>C11114436
CP002630
Deinococcota
Marinithermus hydrothermalis DSM 14884 [CP002630]
1515399
1515473
+
Cys
GCA
[Ensembl]
¡û
>C11116312
CP002361
Deinococcota
Oceanithermus profundus DSM 14977 [CP002361]
1358630
1358704
+
Cys
GCA
[Ensembl]
¡û
>W1511312807
JPSL02000040
Deinococcota
Thermus filiformis ATCC 43280 [JPSL]
41701
41627
-
Cys
GCA
[ENA]
¡û
>W1511401703
JTJB01000034
Deinococcota
Thermus sp. 2.9 [JTJB]
24780
24854
+
Cys
GCA
[ENA]
¡û
>C11123051
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
1860378
1860452
+
Cys
GCA
[Ensembl]
¡û
>C11123178
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
466346
466420
+
Cys
GCA
[Ensembl]
¡û
>C121009747
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
1474344
1474270
-
Cys
GCA
[Ensembl]
¡û
>C161028693
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
1675512
1675438
-
Cys
GCA
-
¡û
>C161067104
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
1516187
1516113
-
Cys
GCA
[Ensembl]
¡û
>W121056027
AIJQ01000004
Deinococcota
Thermus parvatiensis RL [AIJQ]
40196
40270
+
Cys
GCA
[ENA]
¡û
>C131002414
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
1738913
1738839
-
Cys
GCA
[Ensembl]
¡û
>W1610651384
LJJR01000013
Deinococcota
Thermus scotoductus [LJJR]
42852
42778
-
Cys
GCA
[ENA]
¡û
>W1710514640
FNBC01000006
Deinococcota
Thermus arciformis [FNBC]
53561
53487
-
Cys
GCA
[ENA]
¡û
Identical group No.706724 (1 seq.)
>ENV09004148
ADKJ01000076
Hot springs metagenome ctg_1106445192081
2460
2389
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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