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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = GCC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456533 (40 seq.)
>W131155600
AQOS01000008
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
9645
9570
-
Gly
GCC
[ENA]
¡û
>W131160705
AQWU01000032
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
13583
13508
-
Gly
GCC
[ENA]
¡û
>W131160711
AQWU01000039
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
19402
19327
-
Gly
GCC
[ENA]
¡û
>W131218105
ATXJ01000010
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
3203
3278
+
Gly
GCC
[ENA]
¡û
>W131218109
ATXJ01000018
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
15884
15809
-
Gly
GCC
[ENA]
¡û
>W131231961
AUIW01000009
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
100389
100314
-
Gly
GCC
[ENA]
¡û
>W131231973
AUIW01000022
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
9
84
+
Gly
GCC
[ENA]
¡û
>C171047196
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
933697
933772
+
Gly
GCC
-
¡û
>C171047230
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
694396
694321
-
Gly
GCC
-
¡û
>C025885
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
1537593
1537668
+
Gly
GCC
[Ensembl]
¡û
>C025894
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
1891713
1891638
-
Gly
GCC
[Ensembl]
¡û
>C025918
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
12366
12441
+
Gly
GCC
[Ensembl]
¡û
>C025956
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
348904
348829
-
Gly
GCC
[Ensembl]
¡û
>WENV181227353
OFDN01007970
[OFDN] hot springs metagenome; Water
3325
3400
+
Gly
GCC
[ENA]
¢þ
>WENV181404920
OGCB01002084
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
3253
3328
+
Gly
GCC
[ENA]
¢þ
>WENV181405610
OGCE01000563
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
13191
13266
+
Gly
GCC
[ENA]
¢þ
>WENV181408796
OGCH01014585
[OGCH] hot springs metagenome; hot springs
109
34
-
Gly
GCC
[ENA]
¢þ
>W141186983
AYLD01000038
Bacillota
Firmicutes bacterium JGI 0000112-M16 [AYLD]
3749
3674
-
Gly
GCC
[ENA]
¡û
>C181003558
AP017920
Deinococcota
Thermus thermophilus TMY [AP017920]
917634
917709
+
Gly
GCC
-
¡û
>C181003564
AP017920
Deinococcota
Thermus thermophilus TMY [AP017920]
1348381
1348456
+
Gly
GCC
-
¡û
>W141818276
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
124427
124502
+
Gly
GCC
[ENA]
¡û
>W141818315
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
355048
354973
-
Gly
GCC
[ENA]
¡û
>W141820337
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
144410
144485
+
Gly
GCC
[ENA]
¡û
>W141820376
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
396424
396349
-
Gly
GCC
[ENA]
¡û
>W1911578813
PELL01000373
Deinococcota
Thermus scotoductus 39_S39 [PELL]
12380
12305
-
Gly
GCC
[ENA]
¡û
>W1911579440
PELY01000395
Deinococcota
Thermus scotoductus 25_S25 [PELY]
12422
12347
-
Gly
GCC
[ENA]
¡û
>ENV09004194
ADKJ01001516
Hot springs metagenome ctg_1106445192081
4333
4408
+
Gly
GCC
[ENA]
¡û
>W1511401697
JTJB01000030
Deinococcota
Thermus sp. 2.9 [JTJB]
72832
72907
+
Gly
GCC
[ENA]
¡û
>C11123169
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
14614
14689
+
Gly
GCC
[Ensembl]
¡û
>C11123209
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
348538
348463
-
Gly
GCC
[Ensembl]
¡û
>C121006404
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
1889403
1889478
+
Gly
GCC
[Ensembl]
¡û
>C121006412
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
2123635
2123560
-
Gly
GCC
[Ensembl]
¡û
>C121009716
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
14639
14714
+
Gly
GCC
[Ensembl]
¡û
>C121009736
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
1593054
1593129
+
Gly
GCC
[Ensembl]
¡û
>W1610045333
BBBL01000242
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
110
35
-
Gly
GCC
[ENA]
¡û
>W1610045426
BBBN01000383
Deinococcota
Thermus sp. JCM 17653 [BBBN]
1700
1625
-
Gly
GCC
[ENA]
¡û
>W1710042174
BBBL01000242
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
110
35
-
Gly
GCC
[ENA]
¡û
>W1710042267
BBBN01000383
Deinococcota
Thermus sp. JCM 17653 [BBBN]
1700
1625
-
Gly
GCC
[ENA]
¡û
>W1710514663
FNBC01000037
Deinococcota
Thermus arciformis [FNBC]
3217
3292
+
Gly
GCC
[ENA]
¡û
>W1710514666
FNBC01000052
Deinococcota
Thermus arciformis [FNBC]
3217
3292
+
Gly
GCC
[ENA]
¡û
Identical group No.460955 (5 seq.)
>C08010680
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
400702
400775
+
Gly
GCC
[Ensembl]
¡û
>W09107743
ABLS01000097
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [ABLS]
14
87
+
Gly
GCC
[ENA]
¡û
>W09114564
ABZS01000064
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
1800
1727
-
Gly
GCC
[ENA]
¡û
>ENV09004188
ADKJ01001378
Hot springs metagenome ctg_1106445192081
1041
1114
+
Gly
GCC
[ENA]
¡û
>ENV09004225
ADKK01000213
Hot springs metagenome ctg_1106445177583
6118
6191
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK