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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = GCT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.9863 (1 seq.)
>ENV09004191
ADKJ01001492
Hot springs metagenome ctg_1106445192081
331
238
-
Ser
GCT
[ENA]
¡û
Identical group No.9864 (4 seq.)
>C08010684
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
968413
968504
+
Ser
GCT
[Ensembl]
¡û
>W09107736
ABLS01000071
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [ABLS]
735
826
+
Ser
GCT
[ENA]
¡û
>ENV09004204
ADKJ01001596
Hot springs metagenome ctg_1106445192081
5144
5053
-
Ser
GCT
[ENA]
¡û
>ENV09004206
ADKK01000023
Hot springs metagenome ctg_1106445177583
2414
2505
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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