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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = GGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460904 (7 seq.)
>C08010689
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
1290192
1290265
+
Pro
GGG
[Ensembl]
¡û
>W141557078
JHUV01000016
Aquificota
Sulfurihydrogenibium subterraneum DSM 15120 [JHUV]
3182
3109
-
Pro
GGG
[ENA]
¡û
>W09107723
ABLS01000016
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [ABLS]
12891
12964
+
Pro
GGG
[ENA]
¡û
>W09114566
ABZS01000098
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
5492
5565
+
Pro
GGG
[ENA]
¡û
>C09109128
CP001229
Aquificota
Sulfurihydrogenibium azorense Az-Fu1 [CP001229]
293777
293704
-
Pro
GGG
[Ensembl]
¡û
>ENV09004189
ADKJ01001386
Hot springs metagenome ctg_1106445192081
5383
5310
-
Pro
GGG
[ENA]
¡û
>ENV09004208
ADKK01000086
Hot springs metagenome ctg_1106445177583
8743
8670
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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