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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = GGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456537 (79 seq.)
>W1710787519
LJJR01000005
Deinococcota
Thermus scotoductus [LJJR]
130863
130938
+
Thr
GGT
[ENA]
¡û
>C171047204
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
1256058
1256133
+
Thr
GGT
-
¡û
>W131155629
AQOS01000049
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
20191
20266
+
Thr
GGT
[ENA]
¡û
>W131167536
ARDI01000019
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
16144
16219
+
Thr
GGT
[ENA]
¡û
>W131177889
ARLD01000053
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
16170
16245
+
Thr
GGT
[ENA]
¡û
>W131218113
ATXJ01000018
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
537
462
-
Thr
GGT
[ENA]
¡û
>W131231977
AUIW01000022
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
15877
15952
+
Thr
GGT
[ENA]
¡û
>C025890
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
1649780
1649855
+
Thr
GGT
[Ensembl]
¡û
>C025961
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
240300
240225
-
Thr
GGT
[Ensembl]
¡û
>WENV181227384
OFDN01008920
[OFDN] hot springs metagenome; Water
3176
3101
-
Thr
GGT
[ENA]
¢þ
>WENV181285490
OFGS01000999
[OFGS] hot springs metagenome; Water and soil
1090
1165
+
Thr
GGT
[ENA]
¢þ
>WENV181408140
OGCH01000685
[OGCH] hot springs metagenome; hot springs
246
171
-
Thr
GGT
[ENA]
¢þ
>W08011590
ABVK01000005
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
16627
16702
+
Thr
GGT
[ENA]
¡û
>W141186987
AYLD01000077
Bacillota
Firmicutes bacterium JGI 0000112-M16 [AYLD]
2025
2100
+
Thr
GGT
[ENA]
¡û
>C181003580
AP017920
Deinococcota
Thermus thermophilus TMY [AP017920]
1436230
1436155
-
Thr
GGT
-
¡û
>C191159672
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
1979465
1979540
+
Thr
GGT
-
¡û
>C191190023
LR027517
Deinococcota
Thermus thermophilus [LR027517]
1568507
1568432
-
Thr
GGT
-
¡û
>W141818253
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
1911590
1911665
+
Thr
GGT
[ENA]
¡û
>W141818319
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
339402
339327
-
Thr
GGT
[ENA]
¡û
>W141820341
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
159913
159988
+
Thr
GGT
[ENA]
¡û
>W141820753
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
1809646
1809721
+
Thr
GGT
[ENA]
¡û
>W1911578792
PELL01000055
Deinococcota
Thermus scotoductus 39_S39 [PELL]
312
237
-
Thr
GGT
[ENA]
¡û
>W1911578865
PELM01000471
Deinococcota
Thermus scotoductus 38_S38 [PELM]
396
321
-
Thr
GGT
[ENA]
¡û
>W1911578900
PELN01000188
Deinococcota
Thermus scotoductus 37_S37 [PELN]
18433
18508
+
Thr
GGT
[ENA]
¡û
>W1911578922
PELO01000019
Deinococcota
Thermus scotoductus 35_S35 [PELO]
6034
6109
+
Thr
GGT
[ENA]
¡û
>W1911578997
PELP01000321
Deinococcota
Thermus scotoductus 34_S34 [PELP]
15057
15132
+
Thr
GGT
[ENA]
¡û
>W1911579022
PELQ01000014
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
6030
6105
+
Thr
GGT
[ENA]
¡û
>W1911579091
PELR01000244
Deinococcota
Thermus scotoductus 32_S32 [PELR]
18426
18501
+
Thr
GGT
[ENA]
¡û
>W1911579142
PELS01000273
Deinococcota
Thermus scotoductus 31_S31 [PELS]
312
237
-
Thr
GGT
[ENA]
¡û
>W1911579167
PELT01000021
Deinococcota
Thermus scotoductus 30_S30 [PELT]
312
237
-
Thr
GGT
[ENA]
¡û
>W1911579229
PELU01000144
Deinococcota
Thermus scotoductus 29_S29 [PELU]
18433
18508
+
Thr
GGT
[ENA]
¡û
>W1911579285
PELV01000262
Deinococcota
Thermus scotoductus 28_S28 [PELV]
475
550
+
Thr
GGT
[ENA]
¡û
>W1911579322
PELW01000133
Deinococcota
Thermus scotoductus 27_S27 [PELW]
19266
19341
+
Thr
GGT
[ENA]
¡û
>W1911579362
PELX01000033
Deinococcota
Thermus scotoductus 26_S26 [PELX]
312
237
-
Thr
GGT
[ENA]
¡û
>W1911579411
PELY01000033
Deinococcota
Thermus scotoductus 25_S25 [PELY]
312
237
-
Thr
GGT
[ENA]
¡û
>W1911579458
PELZ01000041
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
5641
5716
+
Thr
GGT
[ENA]
¡û
>W1911579530
PEMA01000326
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
312
237
-
Thr
GGT
[ENA]
¡û
>W1911579581
PEMB01000351
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
708
633
-
Thr
GGT
[ENA]
¡û
>W1911579596
PEMC01000029
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
6033
6108
+
Thr
GGT
[ENA]
¡û
>W1911579640
PEMD01000021
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
312
237
-
Thr
GGT
[ENA]
¡û
>W1911579716
PEME01000314
Deinococcota
Thermus scotoductus 19_S19 [PEME]
15397
15472
+
Thr
GGT
[ENA]
¡û
>W1911579738
PEMF01000013
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
7297
7372
+
Thr
GGT
[ENA]
¡û
>W1911579804
PEMG01000233
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
16345
16270
-
Thr
GGT
[ENA]
¡û
>W1911579854
PEMH01000198
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
474
549
+
Thr
GGT
[ENA]
¡û
>W1911579894
PEMI01000166
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
18502
18577
+
Thr
GGT
[ENA]
¡û
>W1911579929
PEMJ01000024
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
5485
5560
+
Thr
GGT
[ENA]
¡û
>W1911580014
PEMK01000322
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
29433
29508
+
Thr
GGT
[ENA]
¡û
>W1911580059
PEML01000317
Deinococcota
Thermus scotoductus 12_S12 [PEML]
312
237
-
Thr
GGT
[ENA]
¡û
>W1911580074
PEMM01000033
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
312
237
-
Thr
GGT
[ENA]
¡û
>W1911580119
PEMN01000006
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
357
282
-
Thr
GGT
[ENA]
¡û
>W1911580188
PEMO01000177
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
18433
18508
+
Thr
GGT
[ENA]
¡û
>W1911580232
PEMP01000155
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
18433
18508
+
Thr
GGT
[ENA]
¡û
>W1911580287
PEMQ01000258
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
802
727
-
Thr
GGT
[ENA]
¡û
>W1911580316
PEMR01000015
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
802
727
-
Thr
GGT
[ENA]
¡û
>W1911580381
PEMS01000354
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
15185
15260
+
Thr
GGT
[ENA]
¡û
>W1911580409
PEMT01000023
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
6032
6107
+
Thr
GGT
[ENA]
¡û
>W1911580462
PEMU01000044
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
802
727
-
Thr
GGT
[ENA]
¡û
>W1911580502
PEMV01000012
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
6032
6107
+
Thr
GGT
[ENA]
¡û
>W1911580554
PEMW01000035
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
615
540
-
Thr
GGT
[ENA]
¡û
>W1810268453
PRDA01000036
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
18650
18725
+
Thr
GGT
[ENA]
¡û
>W1810605112
QGMX01000029
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
206
131
-
Thr
GGT
[ENA]
¡û
>W1810889155
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
1402864
1402939
+
Thr
GGT
[ENA]
¡û
>ENV09004165
ADKJ01000452
Hot springs metagenome ctg_1106445192081
2522
2597
+
Thr
GGT
[ENA]
¡û
>W1511312804
JPSL02000040
Deinococcota
Thermus filiformis ATCC 43280 [JPSL]
433336
433261
-
Thr
GGT
[ENA]
¡û
>W1511401694
JTJB01000025
Deinococcota
Thermus sp. 2.9 [JTJB]
272
197
-
Thr
GGT
[ENA]
¡û
>C11123039
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
150633
150708
+
Thr
GGT
[Ensembl]
¡û
>C11123174
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
128273
128348
+
Thr
GGT
[Ensembl]
¡û
>C121006416
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
2107989
2107914
-
Thr
GGT
[Ensembl]
¡û
>C121009721
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
133074
133149
+
Thr
GGT
[Ensembl]
¡û
>C161028668
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
61759
61834
+
Thr
GGT
-
¡û
>C161067123
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
26242
26167
-
Thr
GGT
[Ensembl]
¡û
>W121056014
AIJQ01000001
Deinococcota
Thermus parvatiensis RL [AIJQ]
44314
44389
+
Thr
GGT
[ENA]
¡û
>W1610045332
BBBL01000217
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
138
63
-
Thr
GGT
[ENA]
¡û
>W1610045414
BBBN01000187
Deinococcota
Thermus sp. JCM 17653 [BBBN]
267
192
-
Thr
GGT
[ENA]
¡û
>C131002411
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
1855341
1855266
-
Thr
GGT
[Ensembl]
¡û
>W1610651374
LJJR01000005
Deinococcota
Thermus scotoductus [LJJR]
130863
130938
+
Thr
GGT
[ENA]
¡û
>W1710042173
BBBL01000217
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
138
63
-
Thr
GGT
[ENA]
¡û
>W1710042255
BBBN01000187
Deinococcota
Thermus sp. JCM 17653 [BBBN]
267
192
-
Thr
GGT
[ENA]
¡û
>W1710514670
FNBC01000056
Deinococcota
Thermus arciformis [FNBC]
850
775
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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