This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = GTA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154209 (11 seq.)
>C171047202
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
1255868
1255953
+
Tyr
GTA
-
¡û
>W131218111
ATXJ01000018
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
728
643
-
Tyr
GTA
[ENA]
¡û
>WENV181408138
OGCH01000685
[OGCH] hot springs metagenome; hot springs
435
350
-
Tyr
GTA
[ENA]
¢þ
>W141820751
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
1809456
1809541
+
Tyr
GTA
[ENA]
¡û
>ENV09004163
ADKJ01000452
Hot springs metagenome ctg_1106445192081
2332
2417
+
Tyr
GTA
[ENA]
¡û
>W1511312802
JPSL02000040
Deinococcota
Thermus filiformis ATCC 43280 [JPSL]
433526
433441
-
Tyr
GTA
[ENA]
¡û
>W1511401692
JTJB01000025
Deinococcota
Thermus sp. 2.9 [JTJB]
462
377
-
Tyr
GTA
[ENA]
¡û
>W1610045330
BBBL01000217
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
328
243
-
Tyr
GTA
[ENA]
¡û
>W1610045412
BBBN01000187
Deinococcota
Thermus sp. JCM 17653 [BBBN]
457
372
-
Tyr
GTA
[ENA]
¡û
>W1710042171
BBBL01000217
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
328
243
-
Tyr
GTA
[ENA]
¡û
>W1710042253
BBBN01000187
Deinococcota
Thermus sp. JCM 17653 [BBBN]
457
372
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK