This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = GTG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275261 (69 seq.)
>W1710787533
LJJR01000014
Deinococcota
Thermus scotoductus [LJJR]
55658
55734
+
His
GTG
[ENA]
¡û
>C171047212
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
1963604
1963680
+
His
GTG
-
¡û
>W131155624
AQOS01000043
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
8669
8593
-
His
GTG
[ENA]
¡û
>W131177922
ARLD01000088
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
7817
7893
+
His
GTG
[ENA]
¡û
>C025873
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
236743
236819
+
His
GTG
[Ensembl]
¡û
>C025927
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
582760
582836
+
His
GTG
[Ensembl]
¡û
>WENV180014172
FPIC01076183
[FPIC] soil metagenome; Soil
12
88
+
His
GTG
[ENA]
¢þ
>W141080523
ATNI01000077
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
30555
30479
-
His
GTG
[ENA]
¡û
>WENV181227932
OFDN01081127
[OFDN] hot springs metagenome; Water
702
626
-
His
GTG
[ENA]
¢þ
>W08011595
ABVK01000006
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
130574
130650
+
His
GTG
[ENA]
¡û
>C181003593
AP017920
Deinococcota
Thermus thermophilus TMY [AP017920]
666910
666834
-
His
GTG
-
¡û
>C191190029
LR027517
Deinococcota
Thermus thermophilus [LR027517]
1050023
1049947
-
His
GTG
-
¡û
>W141818273
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
719216
719140
-
His
GTG
[ENA]
¡û
>W141818289
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
1507886
1507962
+
His
GTG
[ENA]
¡û
>W1911578810
PELL01000369
Deinococcota
Thermus scotoductus 39_S39 [PELL]
27821
27897
+
His
GTG
[ENA]
¡û
>W1911578839
PELM01000111
Deinococcota
Thermus scotoductus 38_S38 [PELM]
28682
28606
-
His
GTG
[ENA]
¡û
>W1911578902
PELN01000333
Deinococcota
Thermus scotoductus 37_S37 [PELN]
12613
12689
+
His
GTG
[ENA]
¡û
>W1911578962
PELO01000329
Deinococcota
Thermus scotoductus 35_S35 [PELO]
8676
8600
-
His
GTG
[ENA]
¡û
>W1911579008
PELP01000548
Deinococcota
Thermus scotoductus 34_S34 [PELP]
11066
10990
-
His
GTG
[ENA]
¡û
>W1911579025
PELQ01000044
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
19021
19097
+
His
GTG
[ENA]
¡û
>W1911579077
PELR01000066
Deinococcota
Thermus scotoductus 32_S32 [PELR]
12613
12689
+
His
GTG
[ENA]
¡û
>W1911579120
PELS01000077
Deinococcota
Thermus scotoductus 31_S31 [PELS]
11029
10953
-
His
GTG
[ENA]
¡û
>W1911579182
PELT01000077
Deinococcota
Thermus scotoductus 30_S30 [PELT]
11056
10980
-
His
GTG
[ENA]
¡û
>W1911579254
PELU01000461
Deinococcota
Thermus scotoductus 29_S29 [PELU]
12613
12689
+
His
GTG
[ENA]
¡û
>W1911579263
PELV01000033
Deinococcota
Thermus scotoductus 28_S28 [PELV]
10987
10911
-
His
GTG
[ENA]
¡û
>W1911579330
PELW01000222
Deinococcota
Thermus scotoductus 27_S27 [PELW]
28668
28592
-
His
GTG
[ENA]
¡û
>W1911579371
PELX01000088
Deinococcota
Thermus scotoductus 26_S26 [PELX]
9070
8994
-
His
GTG
[ENA]
¡û
>W1911579425
PELY01000088
Deinococcota
Thermus scotoductus 25_S25 [PELY]
10794
10870
+
His
GTG
[ENA]
¡û
>W1911579468
PELZ01000111
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
24723
24799
+
His
GTG
[ENA]
¡û
>W1911579500
PEMA01000055
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
11066
10990
-
His
GTG
[ENA]
¡û
>W1911579583
PEMB01000356
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
11201
11125
-
His
GTG
[ENA]
¡û
>W1911579630
PEMC01000335
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
14023
14099
+
His
GTG
[ENA]
¡û
>W1911579655
PEMD01000088
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
16344
16420
+
His
GTG
[ENA]
¡û
>W1911579701
PEME01000122
Deinococcota
Thermus scotoductus 19_S19 [PEME]
14015
14091
+
His
GTG
[ENA]
¡û
>W1911579749
PEMF01000111
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
11155
11079
-
His
GTG
[ENA]
¡û
>W1911579792
PEMG01000055
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
11249
11173
-
His
GTG
[ENA]
¡û
>W1911579858
PEMH01000266
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
4163
4239
+
His
GTG
[ENA]
¡û
>W1911579918
PEMI01000417
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
17120
17044
-
His
GTG
[ENA]
¡û
>W1911579951
PEMJ01000222
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
29378
29302
-
His
GTG
[ENA]
¡û
>W1911579983
PEMK01000088
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
14052
14128
+
His
GTG
[ENA]
¡û
>W1911580064
PEML01000339
Deinococcota
Thermus scotoductus 12_S12 [PEML]
19981
20057
+
His
GTG
[ENA]
¡û
>W1911580087
PEMM01000144
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
14025
14101
+
His
GTG
[ENA]
¡û
>W1911580142
PEMN01000222
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
39569
39645
+
His
GTG
[ENA]
¡û
>W1911580190
PEMO01000266
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
8912
8836
-
His
GTG
[ENA]
¡û
>W1911580212
PEMP01000011
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
17551
17475
-
His
GTG
[ENA]
¡û
>W1911580278
PEMQ01000243
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
19981
20057
+
His
GTG
[ENA]
¡û
>W1911580306
PEMQ01000314
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
8916
8840
-
His
GTG
[ENA]
¡û
>W1911580326
PEMR01000055
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
19953
20029
+
His
GTG
[ENA]
¡û
>W1911580387
PEMS01000390
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
11053
10977
-
His
GTG
[ENA]
¡û
>W1911580439
PEMT01000321
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
11151
11075
-
His
GTG
[ENA]
¡û
>W1911580488
PEMU01000293
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
19953
20029
+
His
GTG
[ENA]
¡û
>W1911580506
PEMV01000044
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
8669
8593
-
His
GTG
[ENA]
¡û
>W1911580547
PEMW01000011
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
8362
8438
+
His
GTG
[ENA]
¡û
>W1810605098
QGMX01000005
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
18232
18308
+
His
GTG
[ENA]
¡û
>ENV09004172
ADKJ01000838
Hot springs metagenome ctg_1106445192081
904
828
-
His
GTG
[ENA]
¡û
>W1511401688
JTJB01000010
Deinococcota
Thermus sp. 2.9 [JTJB]
93456
93532
+
His
GTG
[ENA]
¡û
>C11123071
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
1355719
1355643
-
His
GTG
[Ensembl]
¡û
>C11123180
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
589169
589245
+
His
GTG
[Ensembl]
¡û
>C121006396
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
1051561
1051637
+
His
GTG
[Ensembl]
¡û
>C121009749
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
1351378
1351302
-
His
GTG
[Ensembl]
¡û
>C161028702
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
1024471
1024395
-
His
GTG
-
¡û
>C161067106
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
1387442
1387366
-
His
GTG
[Ensembl]
¡û
>W121056029
AIJQ01000004
Deinococcota
Thermus parvatiensis RL [AIJQ]
169034
169110
+
His
GTG
[ENA]
¡û
>W1610045315
BBBL01000080
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
2519
2595
+
His
GTG
[ENA]
¡û
>W1610045388
BBBN01000002
Deinococcota
Thermus sp. JCM 17653 [BBBN]
10362
10438
+
His
GTG
[ENA]
¡û
>W1610651388
LJJR01000014
Deinococcota
Thermus scotoductus [LJJR]
55658
55734
+
His
GTG
[ENA]
¡û
>W1710042156
BBBL01000080
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
2519
2595
+
His
GTG
[ENA]
¡û
>W1710042229
BBBN01000002
Deinococcota
Thermus sp. JCM 17653 [BBBN]
10362
10438
+
His
GTG
[ENA]
¡û
>W1710514653
FNBC01000018
Deinococcota
Thermus arciformis [FNBC]
37702
37626
-
His
GTG
[ENA]
¡û
Identical group No.460946 (6 seq.)
>C08010676
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
252845
252918
+
His
GTG
[Ensembl]
¡û
>W09107730
ABLS01000031
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [ABLS]
5688
5761
+
His
GTG
[ENA]
¡û
>W09114559
ABZS01000041
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
895
822
-
His
GTG
[ENA]
¡û
>ENV09004168
ADKJ01000672
Hot springs metagenome ctg_1106445192081
191
264
+
His
GTG
[ENA]
¡û
>ENV09004175
ADKJ01000903
Hot springs metagenome ctg_1106445192081
633
706
+
His
GTG
[ENA]
¡û
>ENV09004226
ADKK01000215
Hot springs metagenome ctg_1106445177583
10752
10825
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK