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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = GTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456542 (17 seq.)
>C171047227
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
872124
872049
-
Asn
GTT
-
¡û
>W131160716
AQWU01000049
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
7074
7149
+
Asn
GTT
[ENA]
¡û
>W131231959
AUIW01000008
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
61497
61422
-
Asn
GTT
[ENA]
¡û
>W08011591
ABVK01000005
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
53650
53725
+
Asn
GTT
[ENA]
¡û
>WENV181404498
OGCA01007464
[OGCA] hot springs metagenome; Conch Spring, Yellowstone National Park, Wyoming, USA
672
597
-
Asn
GTT
[ENA]
¢þ
>WENV181404780
OGCB01000230
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
7230
7155
-
Asn
GTT
[ENA]
¢þ
>WENV181405676
OGCE01001166
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
7855
7780
-
Asn
GTT
[ENA]
¢þ
>WENV181407937
OGCH01000245
[OGCH] hot springs metagenome; hot springs
8511
8436
-
Asn
GTT
[ENA]
¢þ
>C191159673
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
2016931
2017006
+
Asn
GTT
-
¡û
>W141818320
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
304880
304805
-
Asn
GTT
[ENA]
¡û
>W141820342
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
196080
196155
+
Asn
GTT
[ENA]
¡û
>W141820754
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
1844335
1844410
+
Asn
GTT
[ENA]
¡û
>W1810605105
QGMX01000017
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
18224
18149
-
Asn
GTT
[ENA]
¡û
>ENV09004180
ADKJ01001095
Hot springs metagenome ctg_1106445192081
721
646
-
Asn
GTT
[ENA]
¡û
>W1511401715
JTJB01000036
Deinococcota
Thermus sp. 2.9 [JTJB]
52346
52271
-
Asn
GTT
[ENA]
¡û
>C161028669
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
98782
98857
+
Asn
GTT
-
¡û
>W1710514648
FNBC01000015
Deinococcota
Thermus arciformis [FNBC]
41596
41521
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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