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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = TAC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.343255 (5 seq.)
>WENV181404686
OGCB01000042
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
25732
25656
-
Val
TAC
[ENA]
¢þ
>WENV181405346
OGCE01000007
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
73430
73354
-
Val
TAC
[ENA]
¢þ
>W08011580
ABVK01000002
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
58248
58175
-
Val
TAC
[ENA]
¡û
>ENV09004151
ADKJ01000087
Hot springs metagenome ctg_1106445192081
1090
1166
+
Val
TAC
[ENA]
¡û
>C161028690
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
2021732
2021656
-
Val
TAC
-
¡û
Identical group No.352284 (3 seq.)
>C08010686
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
1238004
1238079
+
Val
TAC
[Ensembl]
¡û
>W09107724
ABLS01000018
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [ABLS]
18549
18624
+
Val
TAC
[ENA]
¡û
>ENV09004176
ADKJ01000912
Hot springs metagenome ctg_1106445192081
6058
5983
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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