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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = TAG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113979 (4 seq.)
>C08010679
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
400572
400656
+
Leu
TAG
[Ensembl]
¡û
>W09114563
ABZS01000064
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
1930
1846
-
Leu
TAG
[ENA]
¡û
>ENV09004187
ADKJ01001378
Hot springs metagenome ctg_1106445192081
911
995
+
Leu
TAG
[ENA]
¡û
>ENV09004224
ADKK01000213
Hot springs metagenome ctg_1106445177583
5988
6072
+
Leu
TAG
[ENA]
¡û
Identical group No.180747 (17 seq.)
>C171047213
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
1963732
1963816
+
Leu
TAG
-
¡û
>W131167521
ARDI01000010
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
111078
111162
+
Leu
TAG
[ENA]
¡û
>WENV180014191
FPIC01088815
[FPIC] soil metagenome; Soil
1
85
+
Leu
TAG
[ENA]
¢þ
>WENV180014680
FQKF010093351
[FQKF] soil metagenome; Soil
2
86
+
Leu
TAG
[ENA]
¢þ
>WENV181404647
OGCB01000015
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
3968
4052
+
Leu
TAG
[ENA]
¢þ
>WENV181405419
OGCE01000080
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
20935
21019
+
Leu
TAG
[ENA]
¢þ
>WENV181407991
OGCH01000341
[OGCH] hot springs metagenome; hot springs
3644
3560
-
Leu
TAG
[ENA]
¢þ
>W08011596
ABVK01000006
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
130703
130787
+
Leu
TAG
[ENA]
¡û
>ENV09004173
ADKJ01000838
Hot springs metagenome ctg_1106445192081
775
691
-
Leu
TAG
[ENA]
¡û
>W1511312788
JPSL02000039
Deinococcota
Thermus filiformis ATCC 43280 [JPSL]
189768
189852
+
Leu
TAG
[ENA]
¡û
>W1511401689
JTJB01000010
Deinococcota
Thermus sp. 2.9 [JTJB]
93585
93669
+
Leu
TAG
[ENA]
¡û
>C121006397
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
1051690
1051774
+
Leu
TAG
[Ensembl]
¡û
>C161028703
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
1024342
1024258
-
Leu
TAG
-
¡û
>W1610045316
BBBL01000080
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
2648
2732
+
Leu
TAG
[ENA]
¡û
>C131002423
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
1295631
1295547
-
Leu
TAG
[Ensembl]
¡û
>W1710042157
BBBL01000080
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
2648
2732
+
Leu
TAG
[ENA]
¡û
>W1710514654
FNBC01000018
Deinococcota
Thermus arciformis [FNBC]
37572
37488
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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