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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = TCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456543 (69 seq.)
>W1710787544
LJJR01000040
Deinococcota
Thermus scotoductus [LJJR]
15728
15653
-
Gly
TCC
[ENA]
¡û
>C171047237
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
147796
147721
-
Gly
TCC
-
¡û
>W131167524
ARDI01000011
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
71405
71330
-
Gly
TCC
[ENA]
¡û
>W131177906
ARLD01000079
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
49511
49586
+
Gly
TCC
[ENA]
¡û
>W141080512
ATNI01000054
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
87076
87151
+
Gly
TCC
[ENA]
¡û
>W08011599
ABVK01000009
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
79720
79795
+
Gly
TCC
[ENA]
¡û
>WENV181404840
OGCB01000601
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
2677
2602
-
Gly
TCC
[ENA]
¢þ
>WENV181405521
OGCE01000256
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
14245
14170
-
Gly
TCC
[ENA]
¢þ
>WENV181408216
OGCH01000983
[OGCH] hot springs metagenome; hot springs
11472
11547
+
Gly
TCC
[ENA]
¢þ
>C191159652
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
359238
359313
+
Gly
TCC
-
¡û
>W141818233
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
394637
394712
+
Gly
TCC
[ENA]
¡û
>W141818297
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
1815862
1815787
-
Gly
TCC
[ENA]
¡û
>W141820350
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
893232
893307
+
Gly
TCC
[ENA]
¡û
>W141820739
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
544043
544118
+
Gly
TCC
[ENA]
¡û
>W1911578808
PELL01000367
Deinococcota
Thermus scotoductus 39_S39 [PELL]
996
921
-
Gly
TCC
[ENA]
¡û
>W1911578852
PELM01000344
Deinococcota
Thermus scotoductus 38_S38 [PELM]
12027
12102
+
Gly
TCC
[ENA]
¡û
>W1911578880
PELN01000059
Deinococcota
Thermus scotoductus 37_S37 [PELN]
1072
997
-
Gly
TCC
[ENA]
¡û
>W1911578946
PELO01000280
Deinococcota
Thermus scotoductus 35_S35 [PELO]
4626
4551
-
Gly
TCC
[ENA]
¡û
>W1911579000
PELP01000355
Deinococcota
Thermus scotoductus 34_S34 [PELP]
12052
12127
+
Gly
TCC
[ENA]
¡û
>W1911579049
PELQ01000276
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
12030
12105
+
Gly
TCC
[ENA]
¡û
>W1911579102
PELR01000360
Deinococcota
Thermus scotoductus 32_S32 [PELR]
1179
1104
-
Gly
TCC
[ENA]
¡û
>W1911579135
PELS01000261
Deinococcota
Thermus scotoductus 31_S31 [PELS]
11989
12064
+
Gly
TCC
[ENA]
¡û
>W1911579205
PELT01000321
Deinococcota
Thermus scotoductus 30_S30 [PELT]
5004
4929
-
Gly
TCC
[ENA]
¡û
>W1911579245
PELU01000432
Deinococcota
Thermus scotoductus 29_S29 [PELU]
1067
992
-
Gly
TCC
[ENA]
¡û
>W1911579267
PELV01000059
Deinococcota
Thermus scotoductus 28_S28 [PELV]
1117
1042
-
Gly
TCC
[ENA]
¡û
>W1911579334
PELW01000310
Deinococcota
Thermus scotoductus 27_S27 [PELW]
2469
2394
-
Gly
TCC
[ENA]
¡û
>W1911579394
PELX01000322
Deinococcota
Thermus scotoductus 26_S26 [PELX]
7578
7653
+
Gly
TCC
[ENA]
¡û
>W1911579419
PELY01000061
Deinococcota
Thermus scotoductus 25_S25 [PELY]
3736
3811
+
Gly
TCC
[ENA]
¡û
>W1911579448
PELZ01000010
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
1084
1009
-
Gly
TCC
[ENA]
¡û
>W1911579536
PEMA01000337
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
5028
4953
-
Gly
TCC
[ENA]
¡û
>W1911579545
PEMB01000026
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
3032
2957
-
Gly
TCC
[ENA]
¡û
>W1911579617
PEMC01000263
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
4995
4920
-
Gly
TCC
[ENA]
¡û
>W1911579665
PEMD01000270
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
12002
12077
+
Gly
TCC
[ENA]
¡û
>W1911579708
PEME01000222
Deinococcota
Thermus scotoductus 19_S19 [PEME]
25244
25169
-
Gly
TCC
[ENA]
¡û
>W1911579766
PEMF01000369
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
12075
12150
+
Gly
TCC
[ENA]
¡û
>W1911579817
PEMG01000433
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
1075
1000
-
Gly
TCC
[ENA]
¡û
>W1911579837
PEMH01000044
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
266
341
+
Gly
TCC
[ENA]
¡û
>W1911579901
PEMI01000365
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
12050
12125
+
Gly
TCC
[ENA]
¡û
>W1911579948
PEMJ01000134
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
1050
1125
+
Gly
TCC
[ENA]
¡û
>W1911580007
PEMK01000320
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
3660
3735
+
Gly
TCC
[ENA]
¡û
>W1911580061
PEML01000318
Deinococcota
Thermus scotoductus 12_S12 [PEML]
2965
2890
-
Gly
TCC
[ENA]
¡û
>W1911580107
PEMM01000284
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
7578
7653
+
Gly
TCC
[ENA]
¡û
>W1911580149
PEMN01000346
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
12069
12144
+
Gly
TCC
[ENA]
¡û
>W1911580199
PEMO01000379
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
12048
12123
+
Gly
TCC
[ENA]
¡û
>W1911580235
PEMP01000321
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
12010
12085
+
Gly
TCC
[ENA]
¡û
>W1911580296
PEMQ01000286
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
7563
7638
+
Gly
TCC
[ENA]
¡û
>W1911580338
PEMR01000240
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
5028
4953
-
Gly
TCC
[ENA]
¡û
>W1911580384
PEMS01000384
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
12041
12116
+
Gly
TCC
[ENA]
¡û
>W1911580444
PEMT01000335
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
5028
4953
-
Gly
TCC
[ENA]
¡û
>W1911580479
PEMU01000279
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
4631
4556
-
Gly
TCC
[ENA]
¡û
>W1911580522
PEMV01000255
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
12004
12079
+
Gly
TCC
[ENA]
¡û
>W1911580577
PEMW01000344
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
1066
991
-
Gly
TCC
[ENA]
¡û
>W1810268437
PRDA01000018
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
762
687
-
Gly
TCC
[ENA]
¡û
>W1810605074
QGMX01000001
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
84278
84203
-
Gly
TCC
[ENA]
¡û
>W1810889183
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
429798
429723
-
Gly
TCC
[ENA]
¡û
>ENV09004185
ADKJ01001271
Hot springs metagenome ctg_1106445192081
327
252
-
Gly
TCC
[ENA]
¡û
>C11116338
CP002361
Deinococcota
Oceanithermus profundus DSM 14977 [CP002361]
1238722
1238647
-
Gly
TCC
[Ensembl]
¡û
>W1511312769
JPSL02000037
Deinococcota
Thermus filiformis ATCC 43280 [JPSL]
57529
57604
+
Gly
TCC
[ENA]
¡û
>W1511401709
JTJB01000035
Deinococcota
Thermus sp. 2.9 [JTJB]
192
267
+
Gly
TCC
[ENA]
¡û
>C11123048
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
958496
958571
+
Gly
TCC
[Ensembl]
¡û
>C121006428
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
1360271
1360196
-
Gly
TCC
[Ensembl]
¡û
>C161028673
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
700934
701009
+
Gly
TCC
-
¡û
>W1610045342
BBBL01000474
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
412
487
+
Gly
TCC
[ENA]
¡û
>W1610045423
BBBN01000358
Deinococcota
Thermus sp. JCM 17653 [BBBN]
1562
1487
-
Gly
TCC
[ENA]
¡û
>C131002392
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
1075552
1075627
+
Gly
TCC
[Ensembl]
¡û
>W1610651399
LJJR01000040
Deinococcota
Thermus scotoductus [LJJR]
15728
15653
-
Gly
TCC
[ENA]
¡û
>W1710042183
BBBL01000474
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
412
487
+
Gly
TCC
[ENA]
¡û
>W1710042264
BBBN01000358
Deinococcota
Thermus sp. JCM 17653 [BBBN]
1562
1487
-
Gly
TCC
[ENA]
¡û
>W1710514650
FNBC01000017
Deinococcota
Thermus arciformis [FNBC]
17402
17327
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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