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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = TGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275269 (78 seq.)
>W1710787543
LJJR01000040
Deinococcota
Thermus scotoductus [LJJR]
15806
15730
-
Pro
TGG
[ENA]
¡û
>C171047236
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
147874
147798
-
Pro
TGG
-
¡û
>W131155609
AQOS01000015
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
8506
8430
-
Pro
TGG
[ENA]
¡û
>W131160742
AQWU01000072
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
43863
43939
+
Pro
TGG
[ENA]
¡û
>W131167523
ARDI01000011
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
71483
71407
-
Pro
TGG
[ENA]
¡û
>W131177905
ARLD01000079
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
49433
49509
+
Pro
TGG
[ENA]
¡û
>W131218099
ATXJ01000007
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
3966
4042
+
Pro
TGG
[ENA]
¡û
>W131231942
AUIW01000002
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
288706
288782
+
Pro
TGG
[ENA]
¡û
>C025913
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
253686
253610
-
Pro
TGG
[Ensembl]
¡û
>C025951
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
599903
599827
-
Pro
TGG
[Ensembl]
¡û
>WENV180014118
FPIC01058548
[FPIC] soil metagenome; Soil
104
28
-
Pro
TGG
[ENA]
¢þ
>W141080511
ATNI01000054
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
86998
87074
+
Pro
TGG
[ENA]
¡û
>WENV181227505
OFDN01013551
[OFDN] hot springs metagenome; Water
1428
1352
-
Pro
TGG
[ENA]
¢þ
>WENV181404839
OGCB01000601
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
2755
2679
-
Pro
TGG
[ENA]
¢þ
>WENV181405520
OGCE01000256
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
14323
14247
-
Pro
TGG
[ENA]
¢þ
>WENV181408215
OGCH01000983
[OGCH] hot springs metagenome; hot springs
11394
11470
+
Pro
TGG
[ENA]
¢þ
>W08011598
ABVK01000009
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
79642
79718
+
Pro
TGG
[ENA]
¡û
>WENV170700922
LJSS01011458
[LJSS] hot springs metagenome; water from Lobios Hot Spring
318
394
+
Pro
TGG
[ENA]
¢þ
>C181003553
AP017920
Deinococcota
Thermus thermophilus TMY [AP017920]
637911
637987
+
Pro
TGG
-
¡û
>C191159651
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
359160
359236
+
Pro
TGG
-
¡û
>C191189996
LR027517
Deinococcota
Thermus thermophilus [LR027517]
1033305
1033381
+
Pro
TGG
-
¡û
>W141818232
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
394559
394635
+
Pro
TGG
[ENA]
¡û
>W141818296
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
1815940
1815864
-
Pro
TGG
[ENA]
¡û
>W141820349
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
893154
893230
+
Pro
TGG
[ENA]
¡û
>W141820738
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
543965
544041
+
Pro
TGG
[ENA]
¡û
>W1911578807
PELL01000367
Deinococcota
Thermus scotoductus 39_S39 [PELL]
1074
998
-
Pro
TGG
[ENA]
¡û
>W1911578851
PELM01000344
Deinococcota
Thermus scotoductus 38_S38 [PELM]
11949
12025
+
Pro
TGG
[ENA]
¡û
>W1911578879
PELN01000059
Deinococcota
Thermus scotoductus 37_S37 [PELN]
1150
1074
-
Pro
TGG
[ENA]
¡û
>W1911578945
PELO01000280
Deinococcota
Thermus scotoductus 35_S35 [PELO]
4704
4628
-
Pro
TGG
[ENA]
¡û
>W1911578999
PELP01000355
Deinococcota
Thermus scotoductus 34_S34 [PELP]
11974
12050
+
Pro
TGG
[ENA]
¡û
>W1911579048
PELQ01000276
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
11952
12028
+
Pro
TGG
[ENA]
¡û
>W1911579101
PELR01000360
Deinococcota
Thermus scotoductus 32_S32 [PELR]
1257
1181
-
Pro
TGG
[ENA]
¡û
>W1911579134
PELS01000261
Deinococcota
Thermus scotoductus 31_S31 [PELS]
11911
11987
+
Pro
TGG
[ENA]
¡û
>W1911579204
PELT01000321
Deinococcota
Thermus scotoductus 30_S30 [PELT]
5082
5006
-
Pro
TGG
[ENA]
¡û
>W1911579244
PELU01000432
Deinococcota
Thermus scotoductus 29_S29 [PELU]
1145
1069
-
Pro
TGG
[ENA]
¡û
>W1911579266
PELV01000059
Deinococcota
Thermus scotoductus 28_S28 [PELV]
1195
1119
-
Pro
TGG
[ENA]
¡û
>W1911579333
PELW01000310
Deinococcota
Thermus scotoductus 27_S27 [PELW]
2547
2471
-
Pro
TGG
[ENA]
¡û
>W1911579393
PELX01000322
Deinococcota
Thermus scotoductus 26_S26 [PELX]
7500
7576
+
Pro
TGG
[ENA]
¡û
>W1911579418
PELY01000061
Deinococcota
Thermus scotoductus 25_S25 [PELY]
3658
3734
+
Pro
TGG
[ENA]
¡û
>W1911579447
PELZ01000010
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
1162
1086
-
Pro
TGG
[ENA]
¡û
>W1911579535
PEMA01000337
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
5106
5030
-
Pro
TGG
[ENA]
¡û
>W1911579544
PEMB01000026
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
3110
3034
-
Pro
TGG
[ENA]
¡û
>W1911579616
PEMC01000263
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
5073
4997
-
Pro
TGG
[ENA]
¡û
>W1911579664
PEMD01000270
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
11924
12000
+
Pro
TGG
[ENA]
¡û
>W1911579707
PEME01000222
Deinococcota
Thermus scotoductus 19_S19 [PEME]
25322
25246
-
Pro
TGG
[ENA]
¡û
>W1911579765
PEMF01000369
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
11997
12073
+
Pro
TGG
[ENA]
¡û
>W1911579816
PEMG01000433
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
1153
1077
-
Pro
TGG
[ENA]
¡û
>W1911579836
PEMH01000044
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
188
264
+
Pro
TGG
[ENA]
¡û
>W1911579900
PEMI01000365
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
11972
12048
+
Pro
TGG
[ENA]
¡û
>W1911579947
PEMJ01000134
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
972
1048
+
Pro
TGG
[ENA]
¡û
>W1911580006
PEMK01000320
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
3582
3658
+
Pro
TGG
[ENA]
¡û
>W1911580060
PEML01000318
Deinococcota
Thermus scotoductus 12_S12 [PEML]
3043
2967
-
Pro
TGG
[ENA]
¡û
>W1911580106
PEMM01000284
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
7500
7576
+
Pro
TGG
[ENA]
¡û
>W1911580148
PEMN01000346
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
11991
12067
+
Pro
TGG
[ENA]
¡û
>W1911580198
PEMO01000379
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
11970
12046
+
Pro
TGG
[ENA]
¡û
>W1911580234
PEMP01000321
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
11932
12008
+
Pro
TGG
[ENA]
¡û
>W1911580295
PEMQ01000286
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
7485
7561
+
Pro
TGG
[ENA]
¡û
>W1911580337
PEMR01000240
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
5106
5030
-
Pro
TGG
[ENA]
¡û
>W1911580383
PEMS01000384
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
11963
12039
+
Pro
TGG
[ENA]
¡û
>W1911580443
PEMT01000335
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
5106
5030
-
Pro
TGG
[ENA]
¡û
>W1911580478
PEMU01000279
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
4709
4633
-
Pro
TGG
[ENA]
¡û
>W1911580521
PEMV01000255
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
11926
12002
+
Pro
TGG
[ENA]
¡û
>W1911580576
PEMW01000344
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
1144
1068
-
Pro
TGG
[ENA]
¡û
>W1810268436
PRDA01000018
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
840
764
-
Pro
TGG
[ENA]
¡û
>W1810605073
QGMX01000001
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
84356
84280
-
Pro
TGG
[ENA]
¡û
>W1810889182
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
429876
429800
-
Pro
TGG
[ENA]
¡û
>ENV09004184
ADKJ01001271
Hot springs metagenome ctg_1106445192081
405
329
-
Pro
TGG
[ENA]
¡û
>W1511401708
JTJB01000035
Deinococcota
Thermus sp. 2.9 [JTJB]
114
190
+
Pro
TGG
[ENA]
¡û
>C11123047
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
958418
958494
+
Pro
TGG
[Ensembl]
¡û
>C11123204
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
604273
604197
-
Pro
TGG
[Ensembl]
¡û
>C121006427
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
1360349
1360273
-
Pro
TGG
[Ensembl]
¡û
>C121009731
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
1334658
1334734
+
Pro
TGG
[Ensembl]
¡û
>C161028672
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
700856
700932
+
Pro
TGG
-
¡û
>C161067093
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
1370766
1370842
+
Pro
TGG
[Ensembl]
¡û
>W121056031
AIJQ01000004
Deinococcota
Thermus parvatiensis RL [AIJQ]
185718
185642
-
Pro
TGG
[ENA]
¡û
>C131002391
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
1075474
1075550
+
Pro
TGG
[Ensembl]
¡û
>W1610651398
LJJR01000040
Deinococcota
Thermus scotoductus [LJJR]
15806
15730
-
Pro
TGG
[ENA]
¡û
>W1710514649
FNBC01000017
Deinococcota
Thermus arciformis [FNBC]
17480
17404
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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