This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = TTG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780601 (61 seq.)
>W1710787524
LJJR01000007
Deinococcota
Thermus scotoductus [LJJR]
154176
154249
+
Gln
TTG
[ENA]
¡û
>W131160746
AQWU01000074
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
27267
27340
+
Gln
TTG
[ENA]
¡û
>W131167518
ARDI01000007
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
15654
15581
-
Gln
TTG
[ENA]
¡û
>W131177891
ARLD01000062
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
21896
21969
+
Gln
TTG
[ENA]
¡û
>W131218082
ATXJ01000002
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
107142
107215
+
Gln
TTG
[ENA]
¡û
>C171047211
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
1830247
1830320
+
Gln
TTG
-
¡û
>W141080501
ATNI01000027
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
52975
52902
-
Gln
TTG
[ENA]
¡û
>W08011597
ABVK01000008
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
84415
84488
+
Gln
TTG
[ENA]
¡û
>WENV181285560
OFGS01002085
[OFGS] hot springs metagenome; Water and soil
923
850
-
Gln
TTG
[ENA]
¢þ
>WENV181404612
OGCA01024539
[OGCA] hot springs metagenome; Conch Spring, Yellowstone National Park, Wyoming, USA
217
290
+
Gln
TTG
[ENA]
¢þ
>WENV181404673
OGCB01000027
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
254
181
-
Gln
TTG
[ENA]
¢þ
>WENV181405603
OGCE01000542
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
8552
8625
+
Gln
TTG
[ENA]
¢þ
>WENV181408043
OGCH01000431
[OGCH] hot springs metagenome; hot springs
20179
20106
-
Gln
TTG
[ENA]
¢þ
>WENV170700826
LJSS01002091
[LJSS] hot springs metagenome; water from Lobios Hot Spring
760
687
-
Gln
TTG
[ENA]
¢þ
>C191159691
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
862775
862702
-
Gln
TTG
-
¡û
>W141818272
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
831649
831576
-
Gln
TTG
[ENA]
¡û
>W141818288
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
1392373
1392446
+
Gln
TTG
[ENA]
¡û
>W141820372
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
1268675
1268602
-
Gln
TTG
[ENA]
¡û
>W141820770
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
926881
926808
-
Gln
TTG
[ENA]
¡û
>W1911578837
PELM01000056
Deinococcota
Thermus scotoductus 38_S38 [PELM]
4499
4426
-
Gln
TTG
[ENA]
¡û
>W1911578878
PELN01000051
Deinococcota
Thermus scotoductus 37_S37 [PELN]
3785
3858
+
Gln
TTG
[ENA]
¡û
>W1911578958
PELO01000304
Deinococcota
Thermus scotoductus 35_S35 [PELO]
1584
1511
-
Gln
TTG
[ENA]
¡û
>W1911579024
PELQ01000039
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
1582
1509
-
Gln
TTG
[ENA]
¡û
>W1911579074
PELR01000043
Deinococcota
Thermus scotoductus 32_S32 [PELR]
3790
3863
+
Gln
TTG
[ENA]
¡û
>W1911579150
PELS01000292
Deinococcota
Thermus scotoductus 31_S31 [PELS]
1596
1523
-
Gln
TTG
[ENA]
¡û
>W1911579170
PELT01000039
Deinococcota
Thermus scotoductus 30_S30 [PELT]
3820
3893
+
Gln
TTG
[ENA]
¡û
>W1911579219
PELU01000056
Deinococcota
Thermus scotoductus 29_S29 [PELU]
3784
3857
+
Gln
TTG
[ENA]
¡û
>W1911579363
PELX01000041
Deinococcota
Thermus scotoductus 26_S26 [PELX]
1810
1737
-
Gln
TTG
[ENA]
¡û
>W1911579487
PELZ01000458
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
1605
1532
-
Gln
TTG
[ENA]
¡û
>W1911579494
PEMA01000046
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
3543
3616
+
Gln
TTG
[ENA]
¡û
>W1911579550
PEMB01000054
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
1582
1509
-
Gln
TTG
[ENA]
¡û
>W1911579600
PEMC01000047
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
1571
1498
-
Gln
TTG
[ENA]
¡û
>W1911579644
PEMD01000035
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
1581
1508
-
Gln
TTG
[ENA]
¡û
>W1911579728
PEME01000337
Deinococcota
Thermus scotoductus 19_S19 [PEME]
10233
10306
+
Gln
TTG
[ENA]
¡û
>W1911579800
PEMG01000185
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
335
408
+
Gln
TTG
[ENA]
¡û
>W1911579835
PEMH01000043
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
3790
3863
+
Gln
TTG
[ENA]
¡û
>W1911579880
PEMI01000045
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
1583
1510
-
Gln
TTG
[ENA]
¡û
>W1911579940
PEMJ01000102
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
1591
1518
-
Gln
TTG
[ENA]
¡û
>W1911579974
PEMK01000045
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
3797
3870
+
Gln
TTG
[ENA]
¡û
>W1911580022
PEML01000054
Deinococcota
Thermus scotoductus 12_S12 [PEML]
3820
3893
+
Gln
TTG
[ENA]
¡û
>W1911580104
PEMM01000273
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
10243
10316
+
Gln
TTG
[ENA]
¡û
>W1911580169
PEMO01000048
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
1577
1504
-
Gln
TTG
[ENA]
¡û
>W1911580215
PEMP01000050
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
3791
3864
+
Gln
TTG
[ENA]
¡û
>W1911580262
PEMQ01000037
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
3543
3616
+
Gln
TTG
[ENA]
¡û
>W1911580319
PEMR01000039
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
1572
1499
-
Gln
TTG
[ENA]
¡û
>W1911580412
PEMT01000039
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
1580
1507
-
Gln
TTG
[ENA]
¡û
>W1911580451
PEMU01000029
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
3822
3895
+
Gln
TTG
[ENA]
¡û
>W1911580505
PEMV01000036
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
3806
3879
+
Gln
TTG
[ENA]
¡û
>W1810268424
PRDA01000003
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
45094
45021
-
Gln
TTG
[ENA]
¡û
>W1810605097
QGMX01000004
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
97336
97263
-
Gln
TTG
[ENA]
¡û
>ENV09004192
ADKJ01001500
Hot springs metagenome ctg_1106445192081
1099
1172
+
Gln
TTG
[ENA]
¡û
>C11114429
CP002630
Deinococcota
Marinithermus hydrothermalis DSM 14884 [CP002630]
552640
552713
+
Gln
TTG
[Ensembl]
¡û
>W1511401717
JTJB01000039
Deinococcota
Thermus sp. 2.9 [JTJB]
44
117
+
Gln
TTG
[ENA]
¡û
>C11123070
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
1463093
1463020
-
Gln
TTG
[Ensembl]
¡û
>C121006395
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
936694
936767
+
Gln
TTG
[Ensembl]
¡û
>C161028701
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
1172597
1172524
-
Gln
TTG
-
¡û
>W1610045404
BBBN01000092
Deinococcota
Thermus sp. JCM 17653 [BBBN]
3705
3778
+
Gln
TTG
[ENA]
¡û
>C131002426
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
1156174
1156101
-
Gln
TTG
[Ensembl]
¡û
>W1610651379
LJJR01000007
Deinococcota
Thermus scotoductus [LJJR]
154176
154249
+
Gln
TTG
[ENA]
¡û
>W1710042245
BBBN01000092
Deinococcota
Thermus sp. JCM 17653 [BBBN]
3705
3778
+
Gln
TTG
[ENA]
¡û
>W1710514635
FNBC01000003
Deinococcota
Thermus arciformis [FNBC]
112817
112890
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK