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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = TTT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456540 (86 seq.)
>W1710787511
LJJR01000005
Deinococcota
Thermus scotoductus [LJJR]
60109
60184
+
Lys
TTT
[ENA]
¡û
>C171047222
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
1023766
1023691
-
Lys
TTT
-
¡û
>W131155602
AQOS01000009
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
36622
36547
-
Lys
TTT
[ENA]
¡û
>W131160719
AQWU01000053
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
23632
23557
-
Lys
TTT
[ENA]
¡û
>W131167495
ARDI01000002
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
183886
183961
+
Lys
TTT
[ENA]
¡û
>W131177901
ARLD01000078
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
39464
39389
-
Lys
TTT
[ENA]
¡û
>W131218081
ATXJ01000001
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
66185
66110
-
Lys
TTT
[ENA]
¡û
>W131231980
AUIW01000033
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
1157
1232
+
Lys
TTT
[ENA]
¡û
>C025898
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
1582512
1582437
-
Lys
TTT
[Ensembl]
¡û
>C025922
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
302941
303016
+
Lys
TTT
[Ensembl]
¡û
>WENV180012924
FMSI01032425
[FMSI] soil metagenome; Soil
77
2
-
Lys
TTT
[ENA]
¢þ
>WENV180014193
FPIC01090334
[FPIC] soil metagenome; Soil
1
76
+
Lys
TTT
[ENA]
¢þ
>WENV180014697
FQKF010104252
[FQKF] soil metagenome; Soil
78
3
-
Lys
TTT
[ENA]
¢þ
>WENV180036896
FVAA010430026
[FVAA] soil metagenome; Soil
78
3
-
Lys
TTT
[ENA]
¢þ
>W141080526
ATNI01000081
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
117430
117505
+
Lys
TTT
[ENA]
¡û
>WENV181404684
OGCB01000042
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
25979
25904
-
Lys
TTT
[ENA]
¢þ
>WENV181405605
OGCE01000550
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
13413
13488
+
Lys
TTT
[ENA]
¢þ
>WENV181407956
OGCH01000291
[OGCH] hot springs metagenome; hot springs
19391
19316
-
Lys
TTT
[ENA]
¢þ
>WENV181408810
OGCH01015347
[OGCH] hot springs metagenome; hot springs
2
77
+
Lys
TTT
[ENA]
¢þ
>W08011578
ABVK01000002
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
58494
58422
-
Lys
TTT
[ENA]
¡û
>WENV170700807
LJSS01001623
[LJSS] hot springs metagenome; water from Lobios Hot Spring
126
201
+
Lys
TTT
[ENA]
¢þ
>C181003566
AP017920
Deinococcota
Thermus thermophilus TMY [AP017920]
1493823
1493898
+
Lys
TTT
-
¡û
>C191159664
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
1906216
1906291
+
Lys
TTT
-
¡û
>C191190005
LR027517
Deinococcota
Thermus thermophilus [LR027517]
1646429
1646504
+
Lys
TTT
-
¡û
>W141818245
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
1823119
1823194
+
Lys
TTT
[ENA]
¡û
>W141818311
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
402361
402286
-
Lys
TTT
[ENA]
¡û
>W141820333
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
97235
97310
+
Lys
TTT
[ENA]
¡û
>W141820745
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
1749398
1749473
+
Lys
TTT
[ENA]
¡û
>W1911578817
PELL01000391
Deinococcota
Thermus scotoductus 39_S39 [PELL]
28588
28663
+
Lys
TTT
[ENA]
¡û
>W1911578848
PELM01000333
Deinococcota
Thermus scotoductus 38_S38 [PELM]
25965
25890
-
Lys
TTT
[ENA]
¡û
>W1911578872
PELN01000013
Deinococcota
Thermus scotoductus 37_S37 [PELN]
2265
2190
-
Lys
TTT
[ENA]
¡û
>W1911578929
PELO01000054
Deinococcota
Thermus scotoductus 35_S35 [PELO]
619
694
+
Lys
TTT
[ENA]
¡û
>W1911578988
PELP01000222
Deinococcota
Thermus scotoductus 34_S34 [PELP]
5100
5175
+
Lys
TTT
[ENA]
¡û
>W1911579029
PELQ01000053
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
619
694
+
Lys
TTT
[ENA]
¡û
>W1911579069
PELR01000013
Deinococcota
Thermus scotoductus 32_S32 [PELR]
2265
2190
-
Lys
TTT
[ENA]
¡û
>W1911579159
PELS01000327
Deinococcota
Thermus scotoductus 31_S31 [PELS]
619
694
+
Lys
TTT
[ENA]
¡û
>W1911579173
PELT01000049
Deinococcota
Thermus scotoductus 30_S30 [PELT]
619
694
+
Lys
TTT
[ENA]
¡û
>W1911579213
PELU01000015
Deinococcota
Thermus scotoductus 29_S29 [PELU]
5157
5232
+
Lys
TTT
[ENA]
¡û
>W1911579293
PELV01000377
Deinococcota
Thermus scotoductus 28_S28 [PELV]
21332
21257
-
Lys
TTT
[ENA]
¡û
>W1911579342
PELW01000383
Deinococcota
Thermus scotoductus 27_S27 [PELW]
33319
33244
-
Lys
TTT
[ENA]
¡û
>W1911579398
PELX01000355
Deinococcota
Thermus scotoductus 26_S26 [PELX]
617
692
+
Lys
TTT
[ENA]
¡û
>W1911579444
PELY01000444
Deinococcota
Thermus scotoductus 25_S25 [PELY]
31082
31157
+
Lys
TTT
[ENA]
¡û
>W1911579459
PELZ01000053
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
371
296
-
Lys
TTT
[ENA]
¡û
>W1911579495
PEMA01000050
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
619
694
+
Lys
TTT
[ENA]
¡û
>W1911579552
PEMB01000068
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
617
692
+
Lys
TTT
[ENA]
¡û
>W1911579601
PEMC01000053
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
4402
4327
-
Lys
TTT
[ENA]
¡û
>W1911579646
PEMD01000045
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
617
692
+
Lys
TTT
[ENA]
¡û
>W1911579690
PEME01000046
Deinococcota
Thermus scotoductus 19_S19 [PEME]
619
694
+
Lys
TTT
[ENA]
¡û
>W1911579739
PEMF01000014
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
2330
2255
-
Lys
TTT
[ENA]
¡û
>W1911579781
PEMG01000011
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
5161
5236
+
Lys
TTT
[ENA]
¡û
>W1911579869
PEMH01000382
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
4468
4393
-
Lys
TTT
[ENA]
¡û
>W1911579875
PEMI01000014
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
2265
2190
-
Lys
TTT
[ENA]
¡û
>W1911579943
PEMJ01000122
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
21384
21309
-
Lys
TTT
[ENA]
¡û
>W1911579978
PEMK01000056
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
4312
4237
-
Lys
TTT
[ENA]
¡û
>W1911580025
PEML01000063
Deinococcota
Thermus scotoductus 12_S12 [PEML]
617
692
+
Lys
TTT
[ENA]
¡û
>W1911580078
PEMM01000059
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
619
694
+
Lys
TTT
[ENA]
¡û
>W1911580156
PEMN01000361
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
9577
9652
+
Lys
TTT
[ENA]
¡û
>W1911580162
PEMO01000009
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
1977
1902
-
Lys
TTT
[ENA]
¡û
>W1911580209
PEMP01000007
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
2265
2190
-
Lys
TTT
[ENA]
¡û
>W1911580259
PEMQ01000036
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
878
953
+
Lys
TTT
[ENA]
¡û
>W1911580322
PEMR01000049
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
619
694
+
Lys
TTT
[ENA]
¡û
>W1911580399
PEMS01000445
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
5663
5738
+
Lys
TTT
[ENA]
¡û
>W1911580414
PEMT01000049
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
4323
4248
-
Lys
TTT
[ENA]
¡û
>W1911580453
PEMU01000035
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
619
694
+
Lys
TTT
[ENA]
¡û
>W1911580542
PEMV01000342
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
7743
7668
-
Lys
TTT
[ENA]
¡û
>W1911580589
PEMW01000480
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
5144
5219
+
Lys
TTT
[ENA]
¡û
>W1810268429
PRDA01000010
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
22552
22477
-
Lys
TTT
[ENA]
¡û
>W1810605092
QGMX01000003
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
35948
35873
-
Lys
TTT
[ENA]
¡û
>W1810889147
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
1257645
1257720
+
Lys
TTT
[ENA]
¡û
>ENV09004149
ADKJ01000087
Hot springs metagenome ctg_1106445192081
844
919
+
Lys
TTT
[ENA]
¡û
>W1511312775
JPSL02000038
Deinococcota
Thermus filiformis ATCC 43280 [JPSL]
98834
98909
+
Lys
TTT
[ENA]
¡û
>W1511401720
JTJB01000046
Deinococcota
Thermus sp. 2.9 [JTJB]
247
172
-
Lys
TTT
[ENA]
¡û
>C11123031
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
88450
88525
+
Lys
TTT
[Ensembl]
¡û
>C11123213
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
60491
60416
-
Lys
TTT
[Ensembl]
¡û
>C121006386
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
56403
56478
+
Lys
TTT
[Ensembl]
¡û
>C121009760
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
60665
60590
-
Lys
TTT
[Ensembl]
¡û
>C161028688
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
2021978
2021903
-
Lys
TTT
-
¡û
>C161067078
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
96710
96785
+
Lys
TTT
[Ensembl]
¡û
>W121056051
AIJQ01000017
Deinococcota
Thermus parvatiensis RL [AIJQ]
312588
312513
-
Lys
TTT
[ENA]
¡û
>W1610045310
BBBL01000053
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
3316
3241
-
Lys
TTT
[ENA]
¡û
>W1610045425
BBBN01000362
Deinococcota
Thermus sp. JCM 17653 [BBBN]
1418
1343
-
Lys
TTT
[ENA]
¡û
>C131002379
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
38908
38983
+
Lys
TTT
[Ensembl]
¡û
>W1610651366
LJJR01000005
Deinococcota
Thermus scotoductus [LJJR]
60109
60184
+
Lys
TTT
[ENA]
¡û
>W1710042151
BBBL01000053
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
3316
3241
-
Lys
TTT
[ENA]
¡û
>W1710042266
BBBN01000362
Deinococcota
Thermus sp. JCM 17653 [BBBN]
1418
1343
-
Lys
TTT
[ENA]
¡û
>W1710514633
FNBC01000002
Deinococcota
Thermus arciformis [FNBC]
22276
22201
-
Lys
TTT
[ENA]
¡û
Identical group No.460931 (9 seq.)
>C08010713
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
52424
52351
-
Lys
TTT
[Ensembl]
¡û
>W141557049
JHUV01000008
Aquificota
Sulfurihydrogenibium subterraneum DSM 15120 [JHUV]
103516
103589
+
Lys
TTT
[ENA]
¡û
>W141557068
JHUV01000009
Aquificota
Sulfurihydrogenibium subterraneum DSM 15120 [JHUV]
187120
187047
-
Lys
TTT
[ENA]
¡û
>W09107718
ABLS01000004
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [ABLS]
12212
12285
+
Lys
TTT
[ENA]
¡û
>W09114575
ABZS01000190
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
462
535
+
Lys
TTT
[ENA]
¡û
>C09109108
CP001229
Aquificota
Sulfurihydrogenibium azorense Az-Fu1 [CP001229]
1423464
1423537
+
Lys
TTT
[Ensembl]
¡û
>C09109119
CP001229
Aquificota
Sulfurihydrogenibium azorense Az-Fu1 [CP001229]
703945
703872
-
Lys
TTT
[Ensembl]
¡û
>ENV09004202
ADKJ01001595
Hot springs metagenome ctg_1106445192081
4958
4885
-
Lys
TTT
[ENA]
¡û
>ENV09004211
ADKK01000159
Hot springs metagenome ctg_1106445177583
356
429
+
Lys
TTT
[ENA]
¡û
Identical group No.541138 (4 seq.)
>C08010682
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
700476
700551
+
Lys
TTT
[Ensembl]
¡û
>W09107716
ABLS01000003
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [ABLS]
17538
17613
+
Lys
TTT
[ENA]
¡û
>ENV09004171
ADKJ01000722
Hot springs metagenome ctg_1106445192081
3312
3387
+
Lys
TTT
[ENA]
¡û
>ENV09004230
ADKK01000224
Hot springs metagenome ctg_1106445177583
999
1074
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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