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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrothermal vent metagenome LCHCB.C1
Anticodon = CAA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.119709 (1 seq.)
>ENV09001653
ACQI01000740
Hydrothermal vent metagenome LCHCB.C1
2319
2233
-
Leu
CAA
[ENA]
¡û
Identical group No.119712 (1 seq.)
>ENV09001750
ACQI01004891
Hydrothermal vent metagenome LCHCB.C1
3522
3608
+
Leu
CAA
[ENA]
¡û
Identical group No.187343 (1 seq.)
>ENV09001795
ACQI01007070
Hydrothermal vent metagenome LCHCB.C1
390
474
+
Leu
CAA
[ENA]
¡û
Identical group No.187348 (1 seq.)
>ENV09001872
ACQI01019306
Hydrothermal vent metagenome LCHCB.C1
590
674
+
Leu
CAA
[ENA]
¡û
Identical group No.219888 (1 seq.)
>ENV09001819
ACQI01011104
Hydrothermal vent metagenome LCHCB.C1
371
288
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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