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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrothermal vent metagenome LCHCB.C1
Anticodon = CCG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306406 (1 seq.)
>ENV09001634
ACQI01000081
Hydrothermal vent metagenome LCHCB.C1
1346
1422
+
Arg
CCG
[ENA]
¡û
Identical group No.306407 (1 seq.)
>ENV09001635
ACQI01000083
Hydrothermal vent metagenome LCHCB.C1
2291
2367
+
Arg
CCG
[ENA]
¡û
Identical group No.306411 (1 seq.)
>ENV09001656
ACQI01000849
Hydrothermal vent metagenome LCHCB.C1
402
326
-
Arg
CCG
[ENA]
¡û
Identical group No.306416 (16 seq.)
>W131170967
ARFW01000014
Alphaproteobacteria
Ahrensia kielensis DSM 5890 [ARFW]
640592
640516
-
Arg
CCG
[ENA]
¡û
>WENV180377261
OBON01006268
[OBON] marine metagenome; sea water
367
291
-
Arg
CCG
[ENA]
¢þ
>WENV182556805
OJDH01000125
[OJDH] seawater metagenome; Sea water
52884
52808
-
Arg
CCG
[ENA]
¢þ
>WENV182561223
OJDV01017199
[OJDV] seawater metagenome; Sea water
13
89
+
Arg
CCG
[ENA]
¢þ
>WENV182575522
OJFV01000026
[OJFV] seawater metagenome; Sea water
133479
133555
+
Arg
CCG
[ENA]
¢þ
>WENV170306969
CESJ01096735
[CESJ] marine metagenome genome assembly TARA_084_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
950
874
-
Arg
CCG
[ENA]
¢þ
>WENV170326887
CESU01028948
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
262
338
+
Arg
CCG
[ENA]
¢þ
>WENV170572470
FLOH01000900
[FLOH] marine metagenome; water
25218
25294
+
Arg
CCG
[ENA]
¢þ
>WENV170781790
MAAC01000454
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2739
2663
-
Arg
CCG
[ENA]
¢þ
>WENV170783691
MAAC01018378
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
112349
112273
-
Arg
CCG
[ENA]
¢þ
>W141564626
JIAX01000011
Alphaproteobacteria
Ahrensia sp. 13_GOM-1096m [JIAX]
314249
314325
+
Arg
CCG
[ENA]
¡û
>ENV09001710
ACQI01003270
Hydrothermal vent metagenome LCHCB.C1
539
463
-
Arg
CCG
[ENA]
¡û
>W1610626502
LICH01000201
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-120910-bin24 [LICH]
394
318
-
Arg
CCG
[ENA]
¡û
>W1610626701
LICP01000754
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-120419-bin15 [LICP]
935
1011
+
Arg
CCG
[ENA]
¡û
>W1710757629
LICH01000201
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-120910-bin24 [LICH]
394
318
-
Arg
CCG
[ENA]
¡û
>W1710757828
LICP01000754
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-120419-bin15 [LICP]
935
1011
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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