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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrothermal vent metagenome LCHCB.C1
Anticodon = GAG
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.75152 (1 seq.)
>ENV09001847
ACQI01016069
Hydrothermal vent metagenome LCHCB.C1
341
429
+
Leu
GAG
[ENA]
¡û
Identical group No.91316 (1 seq.)
>ENV09001810
ACQI01009922
Hydrothermal vent metagenome LCHCB.C1
155
69
-
Leu
GAG
[ENA]
¡û
Identical group No.119711 (1 seq.)
>ENV09001704
ACQI01003211
Hydrothermal vent metagenome LCHCB.C1
555
641
+
Leu
GAG
[ENA]
¡û
Identical group No.119714 (1 seq.)
>ENV09001837
ACQI01013635
Hydrothermal vent metagenome LCHCB.C1
198
282
+
Leu
GAG
[ENA]
¡û
Identical group No.158330 (1 seq.)
>ENV09001633
ACQI01000044
Hydrothermal vent metagenome LCHCB.C1
292
377
+
Leu
GAG
[ENA]
¡û
Identical group No.158331 (2 seq.)
>C191084721
CP032125
Alphaproteobacteria
Profundibacter amoris BAR1 [CP032125]
2804767
2804682
-
Leu
GAG
-
¡û
>ENV09001662
ACQI01001411
Hydrothermal vent metagenome LCHCB.C1
1141
1226
+
Leu
GAG
[ENA]
¡û
Identical group No.187342 (1 seq.)
>ENV09001745
ACQI01004686
Hydrothermal vent metagenome LCHCB.C1
2806
2890
+
Leu
GAG
[ENA]
¡û
Identical group No.187349 (1 seq.)
>ENV09001877
ACQI01019908
Hydrothermal vent metagenome LCHCB.C1
361
277
-
Leu
GAG
[ENA]
¡û
Identical group No.187353 (1 seq.)
>ENV09001906
ACQI01024677
Hydrothermal vent metagenome LCHCB.C1
749
833
+
Leu
GAG
[ENA]
¡û
Identical group No.219887 (1 seq.)
>ENV09001688
ACQI01002336
Hydrothermal vent metagenome LCHCB.C1
834
917
+
Leu
GAG
[ENA]
¡û
Identical group No.232666 (1 seq.)
>ENV09001825
ACQI01011715
Hydrothermal vent metagenome LCHCB.C1
148
229
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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