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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrothermal vent metagenome LCHCB.C1
Anticodon = GCG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.490078 (2 seq.)
>ENV09001778
ACQI01005855
Hydrothermal vent metagenome LCHCB.C1
171
98
-
Arg
GCG
[ENA]
¡û
>ENV09001870
ACQI01018742
Hydrothermal vent metagenome LCHCB.C1
651
724
+
Arg
GCG
[ENA]
¡û
Identical group No.490094 (1 seq.)
>ENV09001851
ACQI01016520
Hydrothermal vent metagenome LCHCB.C1
222
147
-
Arg
GCG
[ENA]
¡û
Identical group No.675854 (1 seq.)
>ENV09001758
ACQI01005255
Hydrothermal vent metagenome LCHCB.C1
1118
1190
+
Pseudo
GCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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