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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrothermal vent metagenome LCHCB.C1
Anticodon = GTT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278521 (34 seq.)
>W131110924
APLF01000009
Bacteroidota
Psychroflexus gondwanensis ACAM 44 [APLF]
74486
74562
+
Asn
GTT
[ENA]
¡û
>w015961
AAPR01000002
Bacteroidota
Psychroflexus torquis ATCC 700755 [AAPR]
207000
207078
+
Asn
GTT
[ENA]
¡û
>WENV180287452
OBIK01061351
[OBIK] hydrothermal vent metagenome; sea water
151
77
-
Asn
GTT
[ENA]
¢þ
>WENV180383349
OBOU01041656
[OBOU] marine metagenome; ENV:00002010
390
316
-
Asn
GTT
[ENA]
¢þ
>WENV180639180
OCRI01172181
[OCRI] marine metagenome; Sterile flask
146
72
-
Asn
GTT
[ENA]
¢þ
>WENV181309603
OFIW01011994
[OFIW] marine metagenome; seawater
380
454
+
Asn
GTT
[ENA]
¢þ
>WENV181391566
OFRT01023277
[OFRT] seawater metagenome; seawater
147
221
+
Asn
GTT
[ENA]
¢þ
>WENV182547551
OJBS01026842
[OJBS] seawater metagenome; Sea water
549
475
-
Asn
GTT
[ENA]
¢þ
>WENV182559181
OJDO01003299
[OJDO] seawater metagenome; Sea water
414
340
-
Asn
GTT
[ENA]
¢þ
>WENV182565675
OJEH01024667
[OJEH] seawater metagenome; Sea water
981
907
-
Asn
GTT
[ENA]
¢þ
>WENV182566012
OJEI01008900
[OJEI] seawater metagenome; Sea water
13
87
+
Asn
GTT
[ENA]
¢þ
>WENV182569573
OJEZ01013953
[OJEZ] seawater metagenome; Sea water
625
551
-
Asn
GTT
[ENA]
¢þ
>WENV182574071
OJFQ01017336
[OJFQ] seawater metagenome; Sea water
375
449
+
Asn
GTT
[ENA]
¢þ
>WENV182589424
OJID01002868
[OJID] seawater metagenome; Sea water
1361
1435
+
Asn
GTT
[ENA]
¢þ
>WENV182594397
OJIV01006984
[OJIV] seawater metagenome; Sea water
1406
1480
+
Asn
GTT
[ENA]
¢þ
>WENV183619066
OOFP01023142
[OOFP] marine metagenome; seawater
147
221
+
Asn
GTT
[ENA]
¢þ
>WENV183621082
OOFT01004850
[OOFT] marine metagenome; sea ice
142
68
-
Asn
GTT
[ENA]
¢þ
>WENV183622108
OOFV01007034
[OOFV] marine metagenome; seawater
797
723
-
Asn
GTT
[ENA]
¢þ
>WENV183623162
OOFX01022024
[OOFX] marine metagenome; sea ice
306
232
-
Asn
GTT
[ENA]
¢þ
>WENV183625577
OOGG01001538
[OOGG] marine metagenome; sea ice
414
340
-
Asn
GTT
[ENA]
¢þ
>WENV183627707
OOGL01031016
[OOGL] marine metagenome; sea ice
376
302
-
Asn
GTT
[ENA]
¢þ
>WENV170169596
CEOP01220386
[CEOP] marine metagenome genome assembly TARA_009_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
392
316
-
Asn
GTT
[ENA]
¢þ
>WENV170270505
CERI01096982
[CERI] marine metagenome genome assembly TARA_067_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
334
258
-
Asn
GTT
[ENA]
¢þ
>WENV170603439
FUWD010309056
[FUWD] metagenome; unknown
223
147
-
Asn
GTT
[ENA]
¢þ
>WENV170783341
MAAC01016037
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
1933
1859
-
Asn
GTT
[ENA]
¢þ
>WENV170824376
MDSY01074610
[MDSY] marine metagenome; seawater
3789
3865
+
Asn
GTT
[ENA]
¢þ
>WENV170950144
MEHZ011480117
[MEHZ] marine metagenome; marine surface water
985
909
-
Asn
GTT
[ENA]
¢þ
>W1910891619
NEXQ01000026
Bacteroidota
Psychroflexus sp. S27 [NEXQ]
36732
36658
-
Asn
GTT
[ENA]
¡û
>W1810157153
PJBS01000146
Bacteroidota
Psychroflexus sp. MES1-P1E [PJBS]
35795
35869
+
Asn
GTT
[ENA]
¡û
>ENV09001861
ACQI01017412
Hydrothermal vent metagenome LCHCB.C1
145
71
-
Asn
GTT
[ENA]
¡û
>WENV000394
AACY020011876
Marine microbial communities from Global Ocean Sampling (GOS)
312
234
-
Asn
GTT
[ENA]
>C131008930
CP003879
Bacteroidota
Psychroflexus torquis ATCC 700755 [CP003879]
2668767
2668843
+
Asn
GTT
[Ensembl]
¡û
>W1710532315
FNQF01000008
Bacteroidota
Psychroflexus halocasei [FNQF]
45581
45505
-
Asn
GTT
[ENA]
¡û
>W1710582409
FQTW01000006
Bacteroidota
Psychroflexus salarius [FQTW]
146480
146404
-
Asn
GTT
[ENA]
¡û
Identical group No.490052 (2 seq.)
>ENV09001658
ACQI01000927
Hydrothermal vent metagenome LCHCB.C1
169
94
-
Asn
GTT
[ENA]
¡û
>ENV09001841
ACQI01014941
Hydrothermal vent metagenome LCHCB.C1
137
62
-
Asn
GTT
[ENA]
¡û
Identical group No.673421 (4 seq.)
>W131242950
CAOS01000003
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
493206
493132
-
Asn
GTT
[ENA]
¡û
>ENV09001722
ACQI01003615
Hydrothermal vent metagenome LCHCB.C1
955
881
-
Asn
GTT
[ENA]
¡û
>W1710586468
FQXF01000014
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [FQXF]
368
442
+
Asn
GTT
[ENA]
¡û
>W1710586480
FQXF01000027
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [FQXF]
25909
25835
-
Asn
GTT
[ENA]
¡û
Identical group No.675846 (1 seq.)
>ENV09001699
ACQI01002989
Hydrothermal vent metagenome LCHCB.C1
309
235
-
Asn
GTT
[ENA]
¡û
Identical group No.675858 (1 seq.)
>ENV09001793
ACQI01006888
Hydrothermal vent metagenome LCHCB.C1
525
599
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK