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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrothermal vent metagenome LCHCB.C1
Anticodon = TCT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302244 (26 seq.)
>W1710890968
LNCI01000006
Alphaproteobacteria
Tropicimonas marinistellae SF-16 [LNCI]
33031
32955
-
Arg
TCT
[ENA]
¡û
>W1711272861
LZFQ01000034
Alphaproteobacteria
Donghicola sp. JL3646 [LZFQ]
326484
326560
+
Arg
TCT
[ENA]
¡û
>C171081230
CP018572
Alphaproteobacteria
Marivivens sp. JLT3646 [CP018572]
322931
322855
-
Arg
TCT
-
¡û
>W131223021
AUBS01000017
Alphaproteobacteria
Pseudodonghicola xiamenensis DSM 18339 [AUBS]
69842
69918
+
Arg
TCT
[ENA]
¡û
>C023226
CP000031
Alphaproteobacteria
Ruegeria pomeroyi DSS-3 [CP000031]
485463
485387
-
Arg
TCT
[Ensembl]
¡û
>W141230439
BATB01000044
Alphaproteobacteria
Limimaricola cinnabarinus LL-001 [BATB]
3967
4043
+
Arg
TCT
[ENA]
¡û
>WENV170014747
AYSL01008953
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
540
616
+
Arg
TCT
[ENA]
¢þ
>WENV170634493
FYBJ01001489
[FYBJ] marine metagenome; marine
13578
13502
-
Arg
TCT
[ENA]
¢þ
>WENV170802986
MDSW01022925
[MDSW] marine metagenome; seawater
2422
2346
-
Arg
TCT
[ENA]
¢þ
>C181049356
CP021114
Alphaproteobacteria
Aestuarium zhoushanense G7 [CP021114]
2393548
2393624
+
Arg
TCT
-
¡û
>C181081667
CP023454
Alphaproteobacteria
Rhodobacteraceae bacterium QY30 [CP023454]
2693004
2692928
-
Arg
TCT
-
¡û
>C191184393
CP040932
Alphaproteobacteria
Oceanicola sp. D3 [CP040932]
796784
796860
+
Arg
TCT
-
¡û
>W141820561
JQMY01000001
Alphaproteobacteria
Oceanicola sp. MCTG156(1a) [JQMY]
3207471
3207395
-
Arg
TCT
[ENA]
¡û
>W1910443282
FWFY01000003
Alphaproteobacteria
Limimaricola soesokkakensis CECT 8367 [FWFY]
90204
90280
+
Arg
TCT
[ENA]
¡û
>W1910500547
FXZK01000001
Alphaproteobacteria
Flavimaricola marinus CECT 8899 [FXZK]
643731
643655
-
Arg
TCT
[ENA]
¡û
>W1910549018
FZOY01000011
Alphaproteobacteria
Tropicimonas sediminicola DSM 29339 [FZOY]
29935
29859
-
Arg
TCT
[ENA]
¡û
>W1911189715
NQWH01000017
Alphaproteobacteria
Limimaricola cinnabarinus XM1 [NQWH]
55838
55914
+
Arg
TCT
[ENA]
¡û
>W1911747164
QWDA01000009
Alphaproteobacteria
Paracoccaceae bacterium IMCC 34051 [QWDA]
157705
157781
+
Arg
TCT
[ENA]
¡û
>W1810400367
PYGB01000002
Alphaproteobacteria
Limimaricola soesokkakensis DSM 29956 [PYGB]
90172
90248
+
Arg
TCT
[ENA]
¡û
>ENV09001732
ACQI01003954
Hydrothermal vent metagenome LCHCB.C1
717
793
+
Arg
TCT
[ENA]
¡û
>W1610751364
LNCI01000006
Alphaproteobacteria
Tropicimonas marinistellae SF-16 [LNCI]
33031
32955
-
Arg
TCT
[ENA]
¡û
>W1611032210
LZFQ01000034
Alphaproteobacteria
Donghicola sp. JL3646 [LZFQ]
326484
326560
+
Arg
TCT
[ENA]
¡û
>W1710512995
FMZV01000002
Alphaproteobacteria
Ruegeria marina [FMZV]
322260
322184
-
Arg
TCT
[ENA]
¡û
>W1710518528
FNEB01000013
Alphaproteobacteria
Lutimaribacter saemankumensis [FNEB]
3157
3081
-
Arg
TCT
[ENA]
¡û
>W1710524217
FNIO01000001
Alphaproteobacteria
Lutimaribacter pacificus [FNIO]
1170283
1170207
-
Arg
TCT
[ENA]
¡û
>W1710589225
FQZZ01000001
Alphaproteobacteria
Lutimaribacter pacificus [FQZZ]
67886
67962
+
Arg
TCT
[ENA]
¡û
Identical group No.306424 (1 seq.)
>ENV09001752
ACQI01004937
Hydrothermal vent metagenome LCHCB.C1
331
407
+
Arg
TCT
[ENA]
¡û
Identical group No.490073 (1 seq.)
>ENV09001759
ACQI01005268
Hydrothermal vent metagenome LCHCB.C1
22
95
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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