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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrothermal vent metagenome LCHCB.C1
Anticodon = TGG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.304107 (13 seq.)
>w023586
AAXZ01000003
Alphaproteobacteria
Rhodobacteraceae bacterium HTCC2150 HTCC2150 [AAXZ]
120866
120944
+
Pro
TGG
[ENA]
¡û
>WENV182588987
OJHY01006487
[OJHY] seawater metagenome; Sea water
1207
1283
+
Pro
TGG
[ENA]
¢þ
>WENV170473459
CEVH01038848
[CEVH] marine metagenome genome assembly TARA_141_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1846
1770
-
Pro
TGG
[ENA]
¢þ
>WENV170783897
MAAC01019417
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
21120
21044
-
Pro
TGG
[ENA]
¢þ
>WENV170809722
MDSW01137029
[MDSW] marine metagenome; seawater
1693
1617
-
Pro
TGG
[ENA]
¢þ
>W1910443208
FWFW01000007
Alphaproteobacteria
Pacificibacter marinus CECT 7971 [FWFW]
178486
178410
-
Pro
TGG
[ENA]
¡û
>ENV09001874
ACQI01019606
Hydrothermal vent metagenome LCHCB.C1
676
752
+
Pro
TGG
[ENA]
¡û
>W1511479508
JWIF01000059
Alphaproteobacteria
Halocynthiibacter namhaensis RA2-3 [JWIF]
7656
7580
-
Pro
TGG
[ENA]
¡û
>W1610527001
JPUR01000139
Alphaproteobacteria
Marinosulfonomonas sp. PRT-SC04 [JPUR]
14529
14605
+
Pro
TGG
[ENA]
¡û
>W1610597358
LFER01000063
Alphaproteobacteria
Alphaproteobacteria bacterium casp-alpha6 [LFER]
14849
14773
-
Pro
TGG
[ENA]
¡û
>W1710543291
FNZV01000007
Alphaproteobacteria
Pacificibacter marinus [FNZV]
179626
179550
-
Pro
TGG
[ENA]
¡û
>W1710628556
JPUR01000139
Alphaproteobacteria
Marinosulfonomonas sp. PRT-SC04 [JPUR]
14529
14605
+
Pro
TGG
[ENA]
¡û
>W1710718682
LFER01000063
Alphaproteobacteria
Alphaproteobacteria bacterium casp-alpha6 [LFER]
14849
14773
-
Pro
TGG
[ENA]
¡û
Identical group No.306410 (1 seq.)
>ENV09001651
ACQI01000575
Hydrothermal vent metagenome LCHCB.C1
162
86
-
Pro
TGG
[ENA]
¡û
Identical group No.306440 (1 seq.)
>ENV09001860
ACQI01017364
Hydrothermal vent metagenome LCHCB.C1
144
68
-
Pro
TGG
[ENA]
¡û
Identical group No.306444 (1 seq.)
>ENV09001883
ACQI01021350
Hydrothermal vent metagenome LCHCB.C1
203
129
-
Pro
TGG
[ENA]
¡û
Identical group No.490071 (1 seq.)
>ENV09001748
ACQI01004795
Hydrothermal vent metagenome LCHCB.C1
206
131
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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