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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrothermal vent metagenome LCHCB.C1
Anticodon = TTG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.490055 (2 seq.)
>ENV09001674
ACQI01001720
Hydrothermal vent metagenome LCHCB.C1
1247
1172
-
Gln
TTG
[ENA]
¡û
>ENV09001869
ACQI01018050
Hydrothermal vent metagenome LCHCB.C1
369
294
-
Gln
TTG
[ENA]
¡û
Identical group No.673616 (11 seq.)
>W1711373826
MDVX01000003
Alphaproteobacteria
Neptunicoccus sediminis CY02 [MDVX]
158328
158402
+
Gln
TTG
[ENA]
¡û
>W1711373829
MDVX01000003
Alphaproteobacteria
Neptunicoccus sediminis CY02 [MDVX]
159236
159162
-
Gln
TTG
[ENA]
¡û
>WENV183712793
PDWI01114091
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2421
2347
-
Gln
TTG
[ENA]
¢þ
>WENV183712874
PDWI01117127
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1031
957
-
Gln
TTG
[ENA]
¢þ
>WENV183718036
PDWJ01002214
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
13008
12934
-
Gln
TTG
[ENA]
¢þ
>WENV170693173
LGOV01123485
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
195
267
+
Gln
TTG
[ENA]
¢þ
>C191084702
CP032125
Alphaproteobacteria
Profundibacter amoris BAR1 [CP032125]
545744
545818
+
Gln
TTG
-
¡û
>W1810194090
PKOJ01000002
Alphaproteobacteria
Amylibacter cionae m18 [PKOJ]
223027
223101
+
Gln
TTG
[ENA]
¡û
>W1810194094
PKOJ01000002
Alphaproteobacteria
Amylibacter cionae m18 [PKOJ]
224254
224180
-
Gln
TTG
[ENA]
¡û
>ENV09001676
ACQI01001864
Hydrothermal vent metagenome LCHCB.C1
597
523
-
Gln
TTG
[ENA]
¡û
>ENV09001796
ACQI01007732
Hydrothermal vent metagenome LCHCB.C1
88
162
+
Gln
TTG
[ENA]
¡û
Identical group No.673935 (9 seq.)
>W1711621466
MPDD01000001
Bacteroidota
Bacteroidetes bacterium MedPE-SWsnd-G1 [MPDD]
15179
15253
+
Gln
TTG
[ENA]
¡û
>WENV182547372
OJBS01001323
[OJBS] seawater metagenome; Sea water
2109
2037
-
Gln
TTG
[ENA]
¢þ
>WENV182585114
OJHH01001428
[OJHH] seawater metagenome; Sea water
7069
7141
+
Gln
TTG
[ENA]
¢þ
>WENV170692450
LGOV01007729
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
24
96
+
Gln
TTG
[ENA]
¢þ
>WENV170699473
LGVF01562297
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1007
935
-
Gln
TTG
[ENA]
¢þ
>WENV170783808
MAAC01018927
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
323
395
+
Gln
TTG
[ENA]
¢þ
>C191182509
CP040749
Bacteroidota
Aureibaculum algae 10Alg 115 [CP040749]
434466
434538
+
Gln
TTG
-
¡û
>W1810789321
QRGD01000003
Bacteroidota
Aureibaculum luteum SM1352 [QRGD]
529255
529181
-
Gln
TTG
[ENA]
¡û
>ENV09001809
ACQI01009428
Hydrothermal vent metagenome LCHCB.C1
153
227
+
Gln
TTG
[ENA]
¡û
Identical group No.675845 (1 seq.)
>ENV09001693
ACQI01002781
Hydrothermal vent metagenome LCHCB.C1
458
384
-
Gln
TTG
[ENA]
¡û
Identical group No.675849 (1 seq.)
>ENV09001712
ACQI01003356
Hydrothermal vent metagenome LCHCB.C1
1323
1397
+
Gln
TTG
[ENA]
¡û
Identical group No.675853 (2 seq.)
>WENV170012606
ASRM01001698
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
524
450
-
Gln
TTG
[ENA]
¢þ
>ENV09001757
ACQI01005194
Hydrothermal vent metagenome LCHCB.C1
1070
1144
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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