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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Line Islands Corals, microbial fraction of Christmas Atoll (SRP000133)
Anticodon = AAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.467190 (32 seq.)
>WENV180045248
MOXS02096008
[MOXS] marine metagenome; 60 m water sample filtered on 0.2 um supor filter
274
202
-
Val
AAC
[ENA]
¢þ
>WENV180046453
MPLT02097582
[MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter
105
177
+
Val
AAC
[ENA]
¢þ
>WENV180046559
MPLT02108015
[MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter
133
61
-
Val
AAC
[ENA]
¢þ
>WENV180047822
MPLT02271864
[MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter
133
61
-
Val
AAC
[ENA]
¢þ
>WENV180053003
MPLU02339490
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
338
410
+
Val
AAC
[ENA]
¢þ
>WENV180053028
MPLU02340760
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
374
446
+
Val
AAC
[ENA]
¢þ
>WENV180107525
OAPF01225546
[OAPF] marine metagenome; ENVO:00002010
219
293
+
Val
AAC
[ENA]
¢þ
>WENV180356738
OBNL01015127
[OBNL] marine metagenome; ENVO:00002010
410
482
+
Val
AAC
[ENA]
¢þ
>WENV180383202
OBOU01009566
[OBOU] marine metagenome; ENV:00002010
317
389
+
Val
AAC
[ENA]
¢þ
>WENV180383962
OBOV01109520
[OBOV] marine metagenome; ENV:00002010
371
299
-
Val
AAC
[ENA]
¢þ
>WENV180386079
OBPB01031517
[OBPB] marine metagenome; Sterile flask
376
304
-
Val
AAC
[ENA]
¢þ
>WENV180588808
OCOQ01000554
[OCOQ] marine metagenome; ENVO:00002010
918
990
+
Val
AAC
[ENA]
¢þ
>WENV180641744
OCRN01034161
[OCRN] marine metagenome; ENVO:00002010, 'SEA WATER
249
177
-
Val
AAC
[ENA]
¢þ
>WENV180650224
OCSY01000236
[OCSY] marine metagenome; 30 L Plastic container
1097
1025
-
Val
AAC
[ENA]
¢þ
>WENV181325114
OFLI01007120
[OFLI] seawater metagenome; seawater
664
592
-
Val
AAC
[ENA]
¢þ
>WENV181385653
OFRJ01004008
[OFRJ] marine metagenome; seawater
126
198
+
Val
AAC
[ENA]
¢þ
>WENV182550563
OJCA01010216
[OJCA] seawater metagenome; Sea water
1003
1076
+
Val
AAC
[ENA]
¢þ
>WENV182551369
OJCC01003442
[OJCC] seawater metagenome; Sea water
583
655
+
Val
AAC
[ENA]
¢þ
>WENV182552852
OJCQ01001327
[OJCQ] seawater metagenome; Sea water
526
454
-
Val
AAC
[ENA]
¢þ
>WENV182554354
OJCU01002022
[OJCU] seawater metagenome; Sea water
948
876
-
Val
AAC
[ENA]
¢þ
>WENV182559200
OJDO01003867
[OJDO] seawater metagenome; Sea water
1907
1979
+
Val
AAC
[ENA]
¢þ
>WENV182570890
OJFF01006604
[OJFF] seawater metagenome; Sea water
343
415
+
Val
AAC
[ENA]
¢þ
>WENV183054279
OLGT01000031
[OLGT] seawater metagenome; Sea water
2623
2551
-
Val
AAC
[ENA]
¢þ
>WENV183618562
OOFO01007164
[OOFO] marine metagenome; seawater
664
592
-
Val
AAC
[ENA]
¢þ
>ENV08000375
ABMC01057596
microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Christmas Atoll (Kirtimati; Northern Line Islands)
31
103
+
Val
AAC
[ENA]
¡û
>WENV183699825
OZSS01055898
[OZSS] metagenome; Seawater sample
751
823
+
Val
AAC
[ENA]
¢þ
>WENV183797152
PVBE010307997
[PVBE] marine metagenome; water
133
61
-
Val
AAC
[ENA]
¢þ
>WENV170569434
FLMP01203768
[FLMP] seawater metagenome; seawater
59
131
+
Val
AAC
[ENA]
¢þ
>WENV170569657
FLMP01263781
[FLMP] seawater metagenome; seawater
133
205
+
Val
AAC
[ENA]
¢þ
>SRA1000349
SRR001041.176137
Line Islands Corals, microbial fraction of Christmas Atoll (SRP000133)
31
103
+
Val
AAC
[SRA]
>WENV027941
AACY021084539
Marine microbial communities from Global Ocean Sampling (GOS)
331
406
+
Val
AAC
[ENA]
>WENV038071
AACY021905801
Marine microbial communities from Global Ocean Sampling (GOS)
228
153
-
Val
AAC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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