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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Line Islands Corals, microbial fraction of Christmas Atoll (SRP000133)
Anticodon = GAT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.317130 (9 seq.)
>WENV180071278
MPLZ02226086
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
286
212
-
Ile
GAT
[ENA]
¢þ
>WENV180076165
MPMA02262017
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
617
543
-
Ile
GAT
[ENA]
¢þ
>WENV180089614
MPMF02092980
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
44
118
+
Ile
GAT
[ENA]
¢þ
>WENV180091747
MPMF02217721
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
76
2
-
Ile
GAT
[ENA]
¢þ
>WENV180091757
MPMF02218176
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
1078
1004
-
Ile
GAT
[ENA]
¢þ
>ENV08000386
ABMC01150188
microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Christmas Atoll (Kirtimati; Northern Line Islands)
16
90
+
Ile
GAT
[ENA]
¡û
>WENV170437525
CEUU01046462
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
413
487
+
Ile
GAT
[ENA]
¢þ
>WENV170468310
CEVF01024140
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
65
139
+
Ile
GAT
[ENA]
¢þ
>SRA1000336
SRR001041.23020
Line Islands Corals, microbial fraction of Christmas Atoll (SRP000133)
16
90
+
Ile
GAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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