tRNA genes clustered and arranged according to each identical group

Line Islands Corals, microbial fraction of Christmas Atoll (SRP000133)

Anticodon = TTC

HIT: 2 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.457701 (20 seq.)
>W1711340703 MCBV01000027 Gammaproteobacteria Candidatus Marithrix sp. Canyon 246 [MCBV] 19992 19917 - Glu TTC [ENA] ¡û
>W1711340735 MCBW01000023 Gammaproteobacteria Candidatus Marithrix sp. Canyon 246 [MCBW] 16168 16243 + Glu TTC [ENA] ¡û
>W1711340756 MCBX01000001 Gammaproteobacteria Candidatus Marithrix sp. Canyon 246 [MCBX] 31559 31484 - Glu TTC [ENA] ¡û
>W1711340811 MCBY01000026 Gammaproteobacteria Candidatus Marithrix sp. Canyon 246 [MCBY] 16154 16229 + Glu TTC [ENA] ¡û
>W1711340842 MCBZ01000017 Gammaproteobacteria Candidatus Marithrix sp. Canyon 246 [MCBZ] 12256 12181 - Glu TTC [ENA] ¡û
>W1711340869 MCCA01000039 Gammaproteobacteria Candidatus Marithrix sp. Canyon 246 [MCCA] 6582 6657 + Glu TTC [ENA] ¡û
>WENV180343355 OBLK01007205 [OBLK] soil metagenome; Clay 868 793 - Glu TTC [ENA] ¢þ
>WENV180368642 OBOF01172705 [OBOF] marine metagenome; ENVO:00002010 23 98 + Glu TTC [ENA] ¢þ
>ENV08000379 ABMC01074237 microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Christmas Atoll (Kirtimati; Northern Line Islands) 15 90 + Glu TTC [ENA] ¡û
>WENV183700232 OZSS01139966 [OZSS] metagenome; Seawater sample 577 652 + Glu TTC [ENA] ¢þ
>WENV170146780 CENZ01080572 [CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 75 1 - Glu TTC [ENA] ¢þ
>WENV170188409 CEPB01038728 [CEPB] marine metagenome genome assembly TARA_057_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 4315 4390 + Glu TTC [ENA] ¢þ
>WENV170335950 CESZ01109537 [CESZ] marine metagenome genome assembly TARA_078_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 996 1070 + Glu TTC [ENA] ¢þ
>WENV170811133 MDSW01161308 [MDSW] marine metagenome; seawater 2532 2460 - Glu TTC [ENA] ¢þ
>WENV170822214 MDSY01036259 [MDSY] marine metagenome; seawater 672 600 - Glu TTC [ENA] ¢þ
>WENV170829968 MDSZ01018580 [MDSZ] marine metagenome; seawater 3928 4000 + Glu TTC [ENA] ¢þ
>WENV170851637 MDTA01135525 [MDTA] marine metagenome; seawater 3715 3787 + Glu TTC [ENA] ¢þ
>WENV170851929 MDTA01140418 [MDTA] marine metagenome; seawater 30055 29980 - Glu TTC [ENA] ¢þ
>SRA1000337 SRR001041.31365 Line Islands Corals, microbial fraction of Christmas Atoll (SRP000133) 15 90 + Glu TTC [SRA]
>W1810696323 QLTE01000034 Betaproteobacteria Nitrosomonas sp. Nm143 [QLTE] 14982 15057 + Glu TTC [ENA] ¡û
Identical group No.479545 (30 seq.)
>WENV180047344 MPLT02208883 [MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter 2647 2719 + Glu TTC [ENA] ¢þ
>ENV08000366 ABMC01015343 microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Christmas Atoll (Kirtimati; Northern Line Islands) 128 54 - Glu TTC [ENA] ¡û
>ENV08000858 ABMK01028537 marine metagenome; microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Palmyra (Northern Line Islands) 43 115 + Glu TTC [ENA] ¡û
>WENV183807317 PVBE011190239 [PVBE] marine metagenome; water 477 549 + Glu TTC [ENA] ¢þ
>WENV170255404 CEQW01107785 [CEQW] marine metagenome genome assembly TARA_070_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 537 611 + Glu TTC [ENA] ¢þ
>WENV170302576 CESH01172370 [CESH] marine metagenome genome assembly TARA_094_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 197 123 - Glu TTC [ENA] ¢þ
>WENV170309630 CESL01157534 [CESL] marine metagenome genome assembly TARA_102_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1651 1577 - Glu TTC [ENA] ¢þ
>WENV170311863 CESM01195547 [CESM] marine metagenome genome assembly TARA_102_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 197 123 - Glu TTC [ENA] ¢þ
>WENV170330241 CESV01191683 [CESV] marine metagenome genome assembly TARA_100_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1341 1415 + Glu TTC [ENA] ¢þ
>WENV170345376 CETE01271760 [CETE] marine metagenome genome assembly TARA_109_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 6680 6754 + Glu TTC [ENA] ¢þ
>WENV170356027 CETI01506159 [CETI] marine metagenome genome assembly TARA_111_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 327 253 - Glu TTC [ENA] ¢þ
>WENV170357936 CETK01035882 [CETK] marine metagenome genome assembly TARA_111_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 6680 6754 + Glu TTC [ENA] ¢þ
>WENV170374585 CETT01105014 [CETT] marine metagenome genome assembly TARA_110_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1163 1089 - Glu TTC [ENA] ¢þ
>WENV170402544 CEUE01491003 [CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 206 278 + Glu TTC [ENA] ¢þ
>WENV170405541 CEUG01104610 [CEUG] marine metagenome genome assembly TARA_128_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 6680 6754 + Glu TTC [ENA] ¢þ
>WENV170424346 CEUO01094937 [CEUO] marine metagenome genome assembly TARA_124_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 42804 42730 - Glu TTC [ENA] ¢þ
>WENV170428696 CEUQ01487250 [CEUQ] marine metagenome genome assembly TARA_124_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 139 65 - Glu TTC [ENA] ¢þ
>WENV170440291 CEUV01086449 [CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 941 867 - Glu TTC [ENA] ¢þ
>WENV170460888 CEVC01172422 [CEVC] marine metagenome genome assembly TARA_125_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 6682 6756 + Glu TTC [ENA] ¢þ
>WENV170503835 CEVV01135774 [CEVV] marine metagenome genome assembly TARA_152_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 84 12 - Glu TTC [ENA] ¢þ
>WENV170515442 CEWB01024808 [CEWB] marine metagenome genome assembly TARA_068_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 352 424 + Glu TTC [ENA] ¢þ
>WENV170519195 CEWE01212312 [CEWE] marine metagenome genome assembly TARA_124_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 6550 6624 + Glu TTC [ENA] ¢þ
>WENV170522851 CEWG01137278 [CEWG] marine metagenome genome assembly TARA_102_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 42799 42725 - Glu TTC [ENA] ¢þ
>WENV170524630 CEWH01034968 [CEWH] marine metagenome genome assembly TARA_109_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 6678 6752 + Glu TTC [ENA] ¢þ
>WENV170528202 CEWJ01024629 [CEWJ] marine metagenome genome assembly TARA_128_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 82 156 + Glu TTC [ENA] ¢þ
>WENV170798554 MDSV01198601 [MDSV] marine metagenome; seawater 5828 5756 - Glu TTC [ENA] ¢þ
>WENV170884743 MDTC01188788 [MDTC] marine metagenome; seawater 3927 4002 + Glu TTC [ENA] ¢þ
>WENV170892545 MDTD01039568 [MDTD] marine metagenome; seawater 6718 6792 + Glu TTC [ENA] ¢þ
>SRA1000352 SRR001041.183965 Line Islands Corals, microbial fraction of Christmas Atoll (SRP000133) 128 54 - Glu TTC [SRA]
>SRA1000890 SRR001048.338452 Line Islands Corals, microbial fraction from water of Palmyra (SRP000140) 43 115 + Glu TTC [SRA]
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

BACK