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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Line Islands Corals, microbial fraction of Kingman Atoll (SRP000131)
Anticodon = GTA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.187654 (7 seq.)
>ENV08000339
ABMA01021962
microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Kingman Atoll (Northern LineIslands)
112
28
-
Tyr
GTA
[ENA]
¡û
>ENV08000340
ABMA01026853
microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Kingman Atoll (Northern LineIslands)
111
27
-
Tyr
GTA
[ENA]
¡û
>SRA1000307
SRR001039.106058
Line Islands Corals, microbial fraction of Kingman Atoll (SRP000131)
112
28
-
Tyr
GTA
[SRA]
>SRA1000310
SRR001039.116683
Line Islands Corals, microbial fraction of Kingman Atoll (SRP000131)
112
28
-
Tyr
GTA
[SRA]
>SRA1000311
SRR001039.127851
Line Islands Corals, microbial fraction of Kingman Atoll (SRP000131)
111
27
-
Tyr
GTA
[SRA]
>SRA1000317
SRR001039.217517
Line Islands Corals, microbial fraction of Kingman Atoll (SRP000131)
112
28
-
Tyr
GTA
[SRA]
>SRA1000319
SRR001039.240688
Line Islands Corals, microbial fraction of Kingman Atoll (SRP000131)
112
28
-
Tyr
GTA
[SRA]
Identical group No.187655 (2 seq.)
>ENV08000341
ABMA01028069
microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Kingman Atoll (Northern LineIslands)
113
29
-
Tyr
GTA
[ENA]
¡û
>SRA1000308
SRR001039.109170
Line Islands Corals, microbial fraction of Kingman Atoll (SRP000131)
113
29
-
Tyr
GTA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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