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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Line Islands Corals viral fraction from water of Fanning (SRP000143)
Anticodon = CAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156949 (10 seq.)
>ENV08000983
ABMN01174418
marine metagenome; viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Fanning (Tabuaeran; Northern Line Islands)
8
93
+
Leu
CAA
[ENA]
¡û
>WENV170152060
CEOE01027524
[CEOE] marine metagenome genome assembly TARA_025_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
679
764
+
Leu
CAA
[ENA]
¢þ
>WENV170221335
CEQA01090443
[CEQA] marine metagenome genome assembly TARA_041_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
285
200
-
Leu
CAA
[ENA]
¢þ
>WENV170364479
CETM01300269
[CETM] marine metagenome genome assembly TARA_122_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
87
2
-
Leu
CAA
[ENA]
¢þ
>WENV170444520
CEUX01130212
[CEUX] marine metagenome genome assembly TARA_123_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
483
568
+
Leu
CAA
[ENA]
¢þ
>WENV170731116
LULH01027388
[LULH] marine metagenome; Red Sea water column Station 169 - depth 100m
523
608
+
Leu
CAA
[ENA]
¢þ
>WENV170732292
LULI01031111
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
125
40
-
Leu
CAA
[ENA]
¢þ
>WENV170857567
MDTB01010828
[MDTB] marine metagenome; seawater
1354
1439
+
Leu
CAA
[ENA]
¢þ
>SRA1001026
SRR001051.318955
Line Islands Corals viral fraction from water of Fanning (SRP000143)
8
93
+
Leu
CAA
[SRA]
>WENV027986
AACY021087088
Marine microbial communities from Global Ocean Sampling (GOS)
366
451
+
Leu
CAA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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