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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Line Islands Corals viral fraction from water of Fanning (SRP000143)
Anticodon = GTA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.192490 (3 seq.)
>ENV08000962
ABMN01087913
marine metagenome; viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Fanning (Tabuaeran; Northern Line Islands)
23
104
+
Tyr
GTA
[ENA]
¡û
>WENV183797095
PVBE010302827
[PVBE] marine metagenome; water
94
13
-
Tyr
GTA
[ENA]
¢þ
>SRA1000971
SRR001051.21235
Line Islands Corals viral fraction from water of Fanning (SRP000143)
23
104
+
Tyr
GTA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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