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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Line Islands Corals viral fraction from water of Fanning (SRP000143)
Anticodon = TAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.349076 (6 seq.)
>WENV180368545
OBOF01129912
[OBOF] marine metagenome; ENVO:00002010
277
203
-
Val
TAC
[ENA]
¢þ
>ENV08000965
ABMN01108923
marine metagenome; viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Fanning (Tabuaeran; Northern Line Islands)
103
29
-
Val
TAC
[ENA]
¡û
>ENV08000971
ABMN01132097
marine metagenome; viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Fanning (Tabuaeran; Northern Line Islands)
102
28
-
Val
TAC
[ENA]
¡û
>WENV022977
AACY020688799
Marine microbial communities from Global Ocean Sampling (GOS)
290
214
-
Val
TAC
[ENA]
>SRA1001010
SRR001051.183972
Line Islands Corals viral fraction from water of Fanning (SRP000143)
102
28
-
Val
TAC
[SRA]
>SRA1001028
SRR001051.332390
Line Islands Corals viral fraction from water of Fanning (SRP000143)
103
29
-
Val
TAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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