This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Line Islands Corals viral fraction from water of Fanning (SRP000143)
Anticodon = TGT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.502372 (5 seq.)
>ENV08000954
ABMN01074425
marine metagenome; viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Fanning (Tabuaeran; Northern Line Islands)
107
32
-
Thr
TGT
[ENA]
¡û
>WENV170436090
CEUT01021427
[CEUT] marine metagenome genome assembly TARA_125_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
181
106
-
Thr
TGT
[ENA]
¢þ
>WENV170443581
CEUW01243889
[CEUW] marine metagenome genome assembly TARA_122_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
325
250
-
Thr
TGT
[ENA]
¢þ
>WENV170890760
MDTD01014646
[MDTD] marine metagenome; seawater
219
294
+
Thr
TGT
[ENA]
¢þ
>SRA1000985
SRR001051.75636
Line Islands Corals viral fraction from water of Fanning (SRP000143)
107
32
-
Thr
TGT
[SRA]
Identical group No.537956 (5 seq.)
>ENV08001000
ABMN01289109
marine metagenome; viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Fanning (Tabuaeran; Northern Line Islands)
84
9
-
Thr
TGT
[ENA]
¡û
>WENV170193532
CEPH01107394
[CEPH] marine metagenome genome assembly TARA_048_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
440
515
+
Thr
TGT
[ENA]
¢þ
>WENV170831022
MDSZ01037252
[MDSZ] marine metagenome; seawater
2519
2594
+
Thr
TGT
[ENA]
¢þ
>SRA1000969
SRR001051.19279
Line Islands Corals viral fraction from water of Fanning (SRP000143)
84
9
-
Thr
TGT
[SRA]
>WENV030619
AACY021296180
Marine microbial communities from Global Ocean Sampling (GOS)
641
566
-
Thr
TGT
[ENA]
Identical group No.537962 (1 seq.)
>SRA1001005
SRR001051.150746
Line Islands Corals viral fraction from water of Fanning (SRP000143)
30
102
+
Thr
TGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK