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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine Viruses from Arctic Ocean (SRP000129)
Anticodon = ACG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.337555 (5 seq.)
>ENV08000261
ABLY01138217
viral fraction from Arctic Ocean
12
88
+
Arg
ACG
[ENA]
¡û
>ENV08000268
ABLY01154052
viral fraction from Arctic Ocean
12
88
+
Arg
ACG
[ENA]
¡û
>SRA1000149
SRR001036.93448
Marine Viruses from Arctic Ocean (SRP000129)
12
88
+
Arg
ACG
[SRA]
>SRA1000172
SRR001036.261891
Marine Viruses from Arctic Ocean (SRP000129)
12
88
+
Arg
ACG
[SRA]
>SRA1000214
SRR001037.79778
Marine Viruses from Arctic Ocean (SRP000129)
12
88
+
Arg
ACG
[SRA]
Identical group No.360823 (2 seq.)
>ENV08000231
ABLY01060823
viral fraction from Arctic Ocean
37
111
+
Arg
ACG
[ENA]
¡û
>SRA1000171
SRR001036.257084
Marine Viruses from Arctic Ocean (SRP000129)
37
111
+
Arg
ACG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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