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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine Viruses from Arctic Ocean (SRP000129)
Anticodon = CAA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183342 (4 seq.)
>WENV181167769
OEIU01072159
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
879
963
+
Leu
CAA
[ENA]
¢þ
>ENV08000249
ABLY01092055
viral fraction from Arctic Ocean
108
24
-
Leu
CAA
[ENA]
¡û
>SRA1000169
SRR001036.251743
Marine Viruses from Arctic Ocean (SRP000129)
108
24
-
Leu
CAA
[SRA]
>W1710567075
FOSL01000003
Alphaproteobacteria
Mesorhizobium albiziae [FOSL]
50637
50553
-
Leu
CAA
[ENA]
¡û
Identical group No.190368 (22 seq.)
>W1710912503
LNRR01000001
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
509042
509126
+
Leu
CAA
[ENA]
¡û
>W1710912551
LNRS01000001
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
241692
241608
-
Leu
CAA
[ENA]
¡û
>W1710912597
LNRT01000001
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
241692
241608
-
Leu
CAA
[ENA]
¡û
>W1710912640
LNRU01000001
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
509126
509210
+
Leu
CAA
[ENA]
¡û
>W1710912683
LNRV01000003
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
206853
206937
+
Leu
CAA
[ENA]
¡û
>W1710912760
LNRW01000019
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
37829
37745
-
Leu
CAA
[ENA]
¡û
>W1710912784
LNRX01000004
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
188514
188430
-
Leu
CAA
[ENA]
¡û
>W1710912843
LNRY01000012
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
104894
104978
+
Leu
CAA
[ENA]
¡û
>ENV08000263
ABLY01140631
viral fraction from Arctic Ocean
1
85
+
Leu
CAA
[ENA]
¡û
>WENV170973967
MTKY01052236
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
6445
6361
-
Leu
CAA
[ENA]
¢þ
>C191000346
AP017603
Alphaproteobacteria
Sphingopyxis sp. EG6 [AP017603]
1139151
1139235
+
Leu
CAA
-
¡û
>SRA1000192
SRR001036.302952
Marine Viruses from Arctic Ocean (SRP000129)
1
85
+
Leu
CAA
[SRA]
>C151044402
CP009122
Alphaproteobacteria
Sphingopyxis fribergensis Kp5.2 [CP009122]
2389205
2389121
-
Leu
CAA
[Ensembl]
¡û
>W1511221204
JNFD01000021
Alphaproteobacteria
Sphingopyxis sp. LC81 [JNFD]
50172
50256
+
Leu
CAA
[ENA]
¡û
>W1610770862
LNRR01000001
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
509042
509126
+
Leu
CAA
[ENA]
¡û
>W1610770910
LNRS01000001
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
241692
241608
-
Leu
CAA
[ENA]
¡û
>W1610770956
LNRT01000001
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
241692
241608
-
Leu
CAA
[ENA]
¡û
>W1610770999
LNRU01000001
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
509126
509210
+
Leu
CAA
[ENA]
¡û
>W1610771042
LNRV01000003
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
206853
206937
+
Leu
CAA
[ENA]
¡û
>W1610771119
LNRW01000019
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
37829
37745
-
Leu
CAA
[ENA]
¡û
>W1610771143
LNRX01000004
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
188514
188430
-
Leu
CAA
[ENA]
¡û
>W1610771202
LNRY01000012
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
104894
104978
+
Leu
CAA
[ENA]
¡û
Identical group No.193715 (1 seq.)
>SRA1000230
SRR001037.174595
Marine Viruses from Arctic Ocean (SRP000129)
10
95
+
Leu
CAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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