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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine Viruses from Arctic Ocean (SRP000129)
Anticodon = CCA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.525506 (4 seq.)
>W1712105767
NISJ01000002
Alphaproteobacteria
Sphingopyxis witflariensis [NISJ]
167590
167515
-
Trp
CCA
[ENA]
¡û
>ENV08000242
ABLY01079110
viral fraction from Arctic Ocean
99
24
-
Trp
CCA
[ENA]
¡û
>SRA1000231
SRR001037.175322
Marine Viruses from Arctic Ocean (SRP000129)
99
24
-
Trp
CCA
[SRA]
>SRA1000238
SRR001037.230873
Marine Viruses from Arctic Ocean (SRP000129)
99
24
-
Trp
CCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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