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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine Viruses from Arctic Ocean (SRP000129)
Anticodon = CCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276051 (25 seq.)
>W1711385994
MEEV01000012
Alphaproteobacteria
Pelagibacterium sp. SCN 64-44 [MEEV]
39856
39780
-
Arg
CCG
[ENA]
¡û
>WENV180017103
FSWM01000334
[FSWM] metagenome; soil
81813
81737
-
Arg
CCG
[ENA]
¢þ
>WENV180108609
OAPH01205078
[OAPH] marine metagenome; seawater
310
386
+
Arg
CCG
[ENA]
¢þ
>w001797
AAAP01000127
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
829
751
-
Arg
CCG
[ENA]
¡û
>W141243614
CAJQ02000034
Alphaproteobacteria
Afipia birgiae 34632 [CAJQ]
156463
156387
-
Arg
CCG
[ENA]
¡û
>ENV08000272
ABLY01184289
viral fraction from Arctic Ocean
81
5
-
Arg
CCG
[ENA]
¡û
>ENV08000275
ABLY01198221
viral fraction from Arctic Ocean
76
1
-
Arg
CCG
[ENA]
¡û
>WENV170238898
CEQM01257685
[CEQM] marine metagenome genome assembly TARA_078_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3455
3379
-
Arg
CCG
[ENA]
¢þ
>WENV170243620
CEQO01163067
[CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1220
1144
-
Arg
CCG
[ENA]
¢þ
>WENV170248410
CEQQ01127850
[CEQQ] marine metagenome genome assembly TARA_076_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2949
2873
-
Arg
CCG
[ENA]
¢þ
>WENV170789655
MDSV01053497
[MDSV] marine metagenome; seawater
5659
5583
-
Arg
CCG
[ENA]
¢þ
>WENV170807922
MDSW01106419
[MDSW] marine metagenome; seawater
4580
4656
+
Arg
CCG
[ENA]
¢þ
>C191020023
CP022303
Alphaproteobacteria
Thalassococcus sp. S3 [CP022303]
2261264
2261340
+
Arg
CCG
-
¡û
>W141726141
JNAC01000046
Alphaproteobacteria
Sphingobium sp. DC-2 [JNAC]
446
370
-
Arg
CCG
[ENA]
¡û
>W1910285114
FREV01000005
Alphaproteobacteria
Loktanella sp. Alg231-35 [FREV]
352413
352489
+
Arg
CCG
[ENA]
¡û
>W1911148432
NPEV01000058
Alphaproteobacteria
Rhodobium orientis DSM 11290 [NPEV]
14068
14144
+
Arg
CCG
[ENA]
¡û
>W1911615036
POYF01000013
Alphaproteobacteria
Erythrobacter sp. SAORIC-644 [POYF]
21185
21109
-
Arg
CCG
[ENA]
¡û
>SRA1000150
SRR001036.97247
Marine Viruses from Arctic Ocean (SRP000129)
81
5
-
Arg
CCG
[SRA]
>SRA1000151
SRR001036.108551
Marine Viruses from Arctic Ocean (SRP000129)
81
5
-
Arg
CCG
[SRA]
>SRA1000184
SRR001036.294730
Marine Viruses from Arctic Ocean (SRP000129)
81
5
-
Arg
CCG
[SRA]
>SRA1000209
SRR001037.32371
Marine Viruses from Arctic Ocean (SRP000129)
76
1
-
Arg
CCG
[SRA]
>W1810692311
QLIX01000001
Alphaproteobacteria
Roseicella frigidaeris DB-1506 [QLIX]
114906
114982
+
Arg
CCG
[ENA]
¡û
>W1511687952
LFVY01000002
Alphaproteobacteria
Nitratireductor soli ZZ-1 [LFVY]
112517
112441
-
Arg
CCG
[ENA]
¡û
>W1710559539
FOMS01000006
Alphaproteobacteria
Roseivivax sediminis [FOMS]
213413
213337
-
Arg
CCG
[ENA]
¡û
>W1710600160
FTPS01000001
Alphaproteobacteria
Pontibaca methylaminivorans [FTPS]
857763
857687
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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