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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine Viruses from Arctic Ocean (SRP000129)
Anticodon = CCT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301208 (12 seq.)
>W1710864995
LMGI01000001
Alphaproteobacteria
Sphingopyxis sp. Root154 [LMGI]
927553
927477
-
Arg
CCT
[ENA]
¡û
>W1710867399
LMIG01000003
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
292547
292623
+
Arg
CCT
[ENA]
¡û
>W1712105781
NISJ01000008
Alphaproteobacteria
Sphingopyxis witflariensis [NISJ]
88426
88350
-
Arg
CCT
[ENA]
¡û
>ENV08000276
ABLY01198852
viral fraction from Arctic Ocean
104
28
-
Arg
CCT
[ENA]
¡û
>ENV08000283
ABLY01306724
viral fraction from Arctic Ocean
3
79
+
Arg
CCT
[ENA]
¡û
>WENV170973957
MTKY01052133
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2355
2279
-
Arg
CCT
[ENA]
¢þ
>W1910744358
MIAL01000022
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_01_FULL_65_24 [MIAL]
218341
218265
-
Arg
CCT
[ENA]
¡û
>SRA1000206
SRR001036.360940
Marine Viruses from Arctic Ocean (SRP000129)
104
28
-
Arg
CCT
[SRA]
>SRA1000225
SRR001037.144762
Marine Viruses from Arctic Ocean (SRP000129)
3
79
+
Arg
CCT
[SRA]
>C151044393
CP009122
Alphaproteobacteria
Sphingopyxis fribergensis Kp5.2 [CP009122]
3445320
3445244
-
Arg
CCT
[Ensembl]
¡û
>W1610727341
LMGI01000001
Alphaproteobacteria
Sphingopyxis sp. Root154 [LMGI]
927553
927477
-
Arg
CCT
[ENA]
¡û
>W1610729745
LMIG01000003
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
292547
292623
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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